Functional clusters
Information
- Type MapMan
- Description Solute transport.primary active transport.P-type ATPase superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | Contig281 | 1 | CH_bca_97 | 6 | 10 | 0.000000000287968 |
| Brassica napus | A03 | 1 | CH_bna_483 | 5 | 26 | 0.0000799322 |
| Brassica napus | C07 | 1 | CH_bna_499 | 5 | 27 | 0.0000979666 |
| Brassica oleracea | C7 | 1 | CH_bol_206 | 5 | 23 | 0.000016323 |
| Brassica rapa | A03 | 1 | CH_bra_189 | 5 | 24 | 0.0000366785 |
| Vanilla planifolia | CM028155.1 | 1 | CH_vpl_211 | 4 | 9 | 0.0000843274 |
| Brassica carinata | Contig281 | 2 | CH_bca_97 | 6 | 10 | 0.000000000287968 |
| Brassica oleracea | C7 | 2 | CH_bol_206 | 5 | 23 | 0.000016323 |
| Brassica rapa | A03 | 2 | CH_bra_189 | 5 | 24 | 0.0000366785 |
| Vanilla planifolia | CM028155.1 | 2 | CH_vpl_211 | 4 | 9 | 0.0000843274 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 24.1.2.1.1 | Solute transport.primary active transport.P-type ATPase superfamily.P1 family.P1B-type heavy metal cation-transporting ATPase (HMA) | 47 |
| 24.1.2.2.1 | Solute transport.primary active transport.P-type ATPase superfamily.P2 family.P2A-type calcium cation-transporting ATPase (ECA) | 16 |
| 24.1.2.2.2 | Solute transport.primary active transport.P-type ATPase superfamily.P2 family.P2B-type calcium cation-transporting ATPase (ACA) | 84 |
| 24.1.2.3.1 | Solute transport.primary active transport.P-type ATPase superfamily.P3 family.P3A-type proton-translocating ATPase (AHA) | 12 |
| 24.1.2.4.1.1 | Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.P4-type ATPase component ALA | 22 |
| 24.1.2.4.1.2 | Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.regulatory component ALIS | 3 |
| 24.1.2.5.1 | Solute transport.primary active transport.P-type ATPase superfamily.P5 family.P5-type cation-transporting ATPase (MIA) | 14 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |