Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.potassium/sodium cation transporter (HKT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group25 | 1 | CH_ach_162 | 2 | 2 | 0.000162964 |
| Avicennia marina | ScioBoG_52287_HRSCAF_52434 | 1 | CH_ama_19 | 3 | 4 | 0.0000000446052 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 1 | CH_arhy_200 | 3 | 3 | 0.0000000268895 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 1 | CH_arhy_346 | 3 | 11 | 0.00000443504 |
| Brassica carinata | ChrB01 | 1 | CH_bca_1021 | 2 | 2 | 0.00059854 |
| Brassica rapa | A09 | 1 | CH_bra_286 | 2 | 2 | 0.000257588 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 1 | CH_bvu_67 | 4 | 15 | 0.0000000116114 |
| Camellia sinensis var. sinensis | Chr14 | 1 | CH_camsi_813 | 2 | 5 | 0.000458516 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_371 | 2 | 3 | 0.000681569 |
| Cardamine hirsuta | Chr8 | 1 | CH_chi_404 | 2 | 5 | 0.000691133 |
| Citrullus lanatus | CG_Chr06 | 1 | CH_cla_158 | 2 | 3 | 0.000266123 |
| Cucumis melo | chr02 | 1 | CH_cme_199 | 2 | 2 | 0.0000667111 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_43 | 4 | 4 | 0.00000000000117273 |
| Cucumis sativus L. | chr1 | 1 | CH_csa_82 | 3 | 3 | 0.0000000104528 |
| Eucalyptus grandis | Chr03 | 1 | CH_egr_167 | 6 | 20 | 0.0000000000000167558 |
| Erythranthe guttata | scaffold_12 | 1 | CH_egut_144 | 3 | 3 | 0.000000031813 |
| Eutrema salsugineum | scaffold_3 | 1 | CH_esa_65 | 3 | 3 | 0.00000000869853 |
| Fragaria x ananassa | Fvb4-3 | 1 | CH_fan_479 | 2 | 2 | 0.000277554 |
| Fragaria x ananassa | Fvb4-4 | 1 | CH_fan_613 | 2 | 3 | 0.000832634 |
| Fragaria vesca | Fvb4 | 1 | CH_fve_51 | 4 | 7 | 0.0000000000214664 |
| Gossypium raimondii | Chr12 | 1 | CH_gra_321 | 2 | 2 | 0.000160832 |
| Lotus japonicus | chr2 | 1 | CH_lja_98 | 3 | 4 | 0.0000000306801 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_41 | 6 | 16 | 4.52431e-16 |
| Medicago truncatula | chr6 | 1 | CH_mtr_78 | 5 | 9 | 0.00000000000000269301 |
| Nelumbo nucifera | chr8 | 1 | CH_nnu_17 | 6 | 10 | 2.08477e-17 |
| Nicotiana tabacum | Nitab4.5_0000053 | 1 | CH_nta_171 | 2 | 2 | 0.000658364 |
| Nicotiana tabacum | Nitab4.5_0000413 | 1 | CH_nta_172 | 2 | 2 | 0.000658364 |
| Olea europaea | chr11 | 1 | CH_oeu_268 | 2 | 2 | 0.000160137 |
| Punica granatum | NC_045134.1 | 1 | CH_pgr_313 | 2 | 4 | 0.00045018 |
| Prunus persica | Pp01 | 1 | CH_ppe_444 | 2 | 4 | 0.000447544 |
| Phaseolus vulgaris | Chr04 | 1 | CH_pvu_309 | 2 | 2 | 0.0000734727 |
| Quercus lobata | 11 | 1 | CH_qlo_139 | 5 | 11 | 0.0000000000000246192 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_499 | 2 | 2 | 0.0000398653 |
| Rhododendron simsii | chr01 | 1 | CH_rsi_417 | 2 | 3 | 0.000193586 |
| Simmondsia chinensis | GWHAASQ00000008 | 1 | CH_sci_71 | 4 | 33 | 0.000000378057 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_253 | 5 | 8 | 0.00000000000187274 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_344 | 4 | 5 | 0.000000000858305 |
| Solanum lycopersicum | SL4.0ch07 | 1 | CH_sly_355 | 2 | 2 | 0.0000586941 |
| Schrenkiella parvula | ch6-2 | 1 | CH_spa_185 | 2 | 2 | 0.000078734 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_303 | 2 | 2 | 0.000044479 |
| Trochodendron aralioides | group10 | 1 | CH_tar_278 | 2 | 2 | 0.0000600366 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_357 | 2 | 2 | 0.000219716 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_261 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052235.1 | 1 | CH_twi_226 | 2 | 2 | 0.000167252 |
| Vigna mungo | CM024077.1 | 1 | CH_vmu_229 | 2 | 2 | 0.0000646141 |
| Vitis vinifera | chr11 | 1 | CH_vvi_40 | 6 | 13 | 9.83141e-17 |
| Actinidia chinensis | Lachesis_group25 | 2 | CH_ach_162 | 2 | 2 | 0.000162964 |
| Avicennia marina | ScioBoG_52287_HRSCAF_52434 | 2 | CH_ama_19 | 3 | 4 | 0.0000000446052 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 2 | CH_arhy_200 | 3 | 3 | 0.0000000268895 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 2 | CH_arhy_346 | 3 | 11 | 0.00000443504 |
| Brassica carinata | ChrB01 | 2 | CH_bca_1021 | 2 | 2 | 0.00059854 |
| Brassica rapa | A09 | 2 | CH_bra_286 | 2 | 2 | 0.000257588 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 2 | CH_bvu_67 | 4 | 15 | 0.0000000116114 |
| Camellia sinensis var. sinensis | Chr14 | 2 | CH_camsi_813 | 2 | 5 | 0.000458516 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_371 | 2 | 3 | 0.000681569 |
| Cardamine hirsuta | Chr8 | 2 | CH_chi_404 | 2 | 5 | 0.000691133 |
| Citrullus lanatus | CG_Chr06 | 2 | CH_cla_158 | 2 | 3 | 0.000266123 |
| Cucumis melo | chr02 | 2 | CH_cme_199 | 2 | 2 | 0.0000667111 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_43 | 4 | 4 | 0.00000000000117273 |
| Cucumis sativus L. | chr1 | 2 | CH_csa_82 | 3 | 3 | 0.0000000104528 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_167 | 6 | 20 | 0.0000000000000167558 |
| Erythranthe guttata | scaffold_12 | 2 | CH_egut_144 | 3 | 3 | 0.000000031813 |
| Eutrema salsugineum | scaffold_3 | 2 | CH_esa_65 | 3 | 3 | 0.00000000869853 |
| Fragaria x ananassa | Fvb4-3 | 2 | CH_fan_479 | 2 | 2 | 0.000277554 |
| Fragaria x ananassa | Fvb4-4 | 2 | CH_fan_613 | 2 | 3 | 0.000832634 |
| Fragaria vesca | Fvb4 | 2 | CH_fve_51 | 4 | 7 | 0.0000000000214664 |
| Gossypium hirsutum | A04 | 2 | CH_ghi_723 | 2 | 2 | 0.000400523 |
| Gossypium hirsutum | D04 | 2 | CH_ghi_724 | 2 | 2 | 0.000400523 |
| Gossypium raimondii | Chr12 | 2 | CH_gra_321 | 2 | 2 | 0.000160832 |
| Lotus japonicus | chr2 | 2 | CH_lja_98 | 3 | 4 | 0.0000000306801 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_41 | 6 | 16 | 4.52431e-16 |
| Nelumbo nucifera | chr8 | 2 | CH_nnu_17 | 6 | 10 | 2.08477e-17 |
| Nicotiana tabacum | Nitab4.5_0000053 | 2 | CH_nta_171 | 2 | 2 | 0.000658364 |
| Nicotiana tabacum | Nitab4.5_0000413 | 2 | CH_nta_172 | 2 | 2 | 0.000658364 |
| Olea europaea | chr11 | 2 | CH_oeu_268 | 2 | 2 | 0.000160137 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_313 | 2 | 4 | 0.00045018 |
| Prunus persica | Pp01 | 2 | CH_ppe_444 | 2 | 4 | 0.000447544 |
| Phaseolus vulgaris | Chr04 | 2 | CH_pvu_309 | 2 | 2 | 0.0000734727 |
| Quercus lobata | 11 | 2 | CH_qlo_139 | 5 | 11 | 0.0000000000000246192 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_499 | 2 | 2 | 0.0000398653 |
| Rhododendron simsii | chr01 | 2 | CH_rsi_417 | 2 | 3 | 0.000193586 |
| Simmondsia chinensis | GWHAASQ00000008 | 2 | CH_sci_71 | 4 | 33 | 0.000000378057 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_253 | 5 | 8 | 0.00000000000187274 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_344 | 4 | 5 | 0.000000000858305 |
| Solanum lycopersicum | SL4.0ch07 | 2 | CH_sly_355 | 2 | 2 | 0.0000586941 |
| Schrenkiella parvula | ch6-2 | 2 | CH_spa_185 | 2 | 2 | 0.000078734 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_303 | 2 | 2 | 0.000044479 |
| Trochodendron aralioides | group10 | 2 | CH_tar_278 | 2 | 2 | 0.0000600366 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_357 | 2 | 2 | 0.000219716 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_261 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052235.1 | 2 | CH_twi_226 | 2 | 2 | 0.000167252 |
| Vigna mungo | CM024077.1 | 2 | CH_vmu_229 | 2 | 2 | 0.0000646141 |
| Vitis vinifera | chr11 | 2 | CH_vvi_40 | 6 | 13 | 9.83141e-17 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |