Functional clusters
Information
- Type MapMan
- Description Solute transport.channels.AMT family.ammonium transporter (AMT2/3)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_404 | 2 | 5 | 0.000659979 |
| Carpinus fangiana | Cfa07 | 1 | CH_cfa_380 | 3 | 22 | 0.00073947 |
| Carya illinoinensis | Chr09 | 1 | CH_cil_539 | 2 | 2 | 0.000619828 |
| Prunus persica | Pp04 | 1 | CH_ppe_106 | 5 | 16 | 0.000000000127617 |
| Papaver somniferum | NW_020628818.1 | 1 | CH_pso_314 | 3 | 4 | 0.00000138478 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_347 | 3 | 6 | 0.00000692236 |
| Populus trichocarpa | Chr19 | 1 | CH_ptr_161 | 4 | 8 | 0.0000000289693 |
| Quercus lobata | 7 | 1 | CH_qlo_402 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_143 | 4 | 5 | 0.0000000000665216 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_504 | 2 | 2 | 0.000387184 |
| Salvia bowleyana | GWHASIU00000003 | 1 | CH_sbo_144 | 4 | 13 | 0.0000000998574 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_573 | 3 | 3 | 0.000000587373 |
| Trochodendron aralioides | group4 | 1 | CH_tar_182 | 3 | 3 | 0.00000196806 |
| Utricularia gibba | unitig_37 | 1 | CH_ugi_264 | 2 | 2 | 0.000440755 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_377 | 2 | 2 | 0.000557543 |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_404 | 2 | 5 | 0.000659979 |
| Carpinus fangiana | Cfa07 | 2 | CH_cfa_380 | 3 | 22 | 0.00073947 |
| Carya illinoinensis | Chr09 | 2 | CH_cil_539 | 2 | 2 | 0.000619828 |
| Prunus persica | Pp04 | 2 | CH_ppe_106 | 5 | 16 | 0.000000000127617 |
| Papaver somniferum | NW_020628818.1 | 2 | CH_pso_314 | 3 | 4 | 0.00000138478 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_347 | 3 | 6 | 0.00000692236 |
| Populus trichocarpa | Chr19 | 2 | CH_ptr_161 | 4 | 8 | 0.0000000289693 |
| Quercus lobata | 7 | 2 | CH_qlo_402 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_143 | 4 | 5 | 0.0000000000665216 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_504 | 2 | 2 | 0.000387184 |
| Salvia bowleyana | GWHASIU00000003 | 2 | CH_sbo_144 | 4 | 13 | 0.0000000998574 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_573 | 3 | 3 | 0.000000587373 |
| Trochodendron aralioides | group4 | 2 | CH_tar_182 | 3 | 3 | 0.00000196806 |
| Utricularia gibba | unitig_37 | 2 | CH_ugi_264 | 2 | 2 | 0.000440755 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_377 | 2 | 2 | 0.000557543 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |