Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.VIT family.metal cation transporter (MEB)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 1 CH_acertr_337 2 2 0.000070497
Arabidopsis lyrata scaffold_7 1 CH_aly_97 3 3 0.0000000261404
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 1 CH_amhyb_74 3 9 0.00000356964
Arabidopsis thaliana Chr4 1 CH_ath_129 3 8 0.0000000984871
Brassica carinata ChrC09 1 CH_bca_242 3 3 0.000000113097
Brassica carinata Contig531 1 CH_bca_243 3 3 0.000000113097
Brassica napus A01 1 CH_bna_215 3 3 0.000000187912
Brassica napus C01 1 CH_bna_216 3 3 0.000000187912
Brassica oleracea C7 1 CH_bol_416 2 2 0.000686409
Brassica oleracea C1 1 CH_bol_93 3 3 0.0000000560911
Brassica rapa A01 1 CH_bra_76 3 3 0.0000000276471
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_191 2 2 0.0000827917
Cannabis sativa NC_044373.1 1 CH_cansat_99 4 30 0.00000002326
Coffea canephora chr1 1 CH_ccan_352 2 15 0.000702697
Cardamine hirsuta Chr7 1 CH_chi_308 2 2 0.000207361
Citrullus lanatus CG_Chr09 1 CH_cla_23 4 17 0.00000000498247
Cucumis melo chr01 1 CH_cme_195 2 2 0.0000667111
Chenopodium quinoa C_Quinoa_Scaffold_2933 1 CH_cqu_444 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_1001 1 CH_cqu_445 2 2 0.000284293
Capsella rubella scaffold_7 1 CH_cru_138 3 4 0.000000128297
Cucumis sativus L. chr7 1 CH_csa_247 2 3 0.000250417
Daucus carota DCARv2_Chr1 1 CH_dca_372 2 2 0.000382665
Davidia involucrata GWHABJS00000010 1 CH_din_360 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_141 3 4 0.000000120807
Eutrema salsugineum scaffold_1 1 CH_esa_310 2 3 0.000685305
Fragaria x ananassa Fvb2-2 1 CH_fan_397 2 2 0.000111022
Fragaria x ananassa Fvb2-1 1 CH_fan_398 2 2 0.000111022
Fragaria vesca Fvb2 1 CH_fve_277 2 2 0.0000589102
Lupinus albus Lalb_Chr12 1 CH_lal_71 3 3 0.0000000165269
Olea europaea chr12 1 CH_oeu_257 2 2 0.000160137
Punica granatum NC_045130.1 1 CH_pgr_221 2 2 0.0000750356
Pisum sativum chr4LG4 1 CH_psa_295 2 2 0.00015649
Phaseolus vulgaris Chr10 1 CH_pvu_424 2 2 0.000440836
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_188 3 3 0.00000000238391
Sechium edule LG09 1 CH_sed_43 5 48 0.00000000033222
Schrenkiella parvula ch7-5 1 CH_spa_91 3 3 0.0000000929892
Vigna mungo CM024078.1 1 CH_vmu_358 2 2 0.000387685
Acer truncatum chr12 2 CH_acertr_337 2 2 0.000070497
Arabidopsis lyrata scaffold_7 2 CH_aly_97 3 3 0.0000000261404
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 2 CH_amhyb_74 3 9 0.00000356964
Arabidopsis thaliana Chr4 2 CH_ath_129 3 8 0.0000000984871
Brassica carinata ChrC09 2 CH_bca_242 3 3 0.000000113097
Brassica carinata Contig531 2 CH_bca_243 3 3 0.000000113097
Brassica oleracea C7 2 CH_bol_416 2 2 0.000686409
Brassica oleracea C1 2 CH_bol_93 3 3 0.0000000560911
Brassica rapa A01 2 CH_bra_76 3 3 0.0000000276471
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_191 2 2 0.0000827917
Cannabis sativa NC_044373.1 2 CH_cansat_99 4 30 0.00000002326
Coffea canephora chr1 2 CH_ccan_352 2 15 0.000702697
Cardamine hirsuta Chr7 2 CH_chi_308 2 2 0.000207361
Citrullus lanatus CG_Chr09 2 CH_cla_23 4 17 0.00000000498247
Cucumis melo chr01 2 CH_cme_195 2 2 0.0000667111
Chenopodium quinoa C_Quinoa_Scaffold_2933 2 CH_cqu_444 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_1001 2 CH_cqu_445 2 2 0.000284293
Capsella rubella scaffold_7 2 CH_cru_138 3 4 0.000000128297
Cucumis sativus L. chr7 2 CH_csa_247 2 3 0.000250417
Daucus carota DCARv2_Chr1 2 CH_dca_372 2 2 0.000382665
Davidia involucrata GWHABJS00000010 2 CH_din_360 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_141 3 4 0.000000120807
Eucalyptus grandis Chr01 2 CH_egr_698 2 2 0.0000585274
Eutrema salsugineum scaffold_1 2 CH_esa_310 2 3 0.000685305
Fragaria x ananassa Fvb2-2 2 CH_fan_397 2 2 0.000111022
Fragaria x ananassa Fvb2-1 2 CH_fan_398 2 2 0.000111022
Fragaria vesca Fvb2 2 CH_fve_277 2 2 0.0000589102
Lupinus albus Lalb_Chr12 2 CH_lal_71 3 3 0.0000000165269
Olea europaea chr12 2 CH_oeu_257 2 2 0.000160137
Punica granatum NC_045130.1 2 CH_pgr_221 2 2 0.0000750356
Pisum sativum chr4LG4 2 CH_psa_295 2 2 0.00015649
Phaseolus vulgaris Chr10 2 CH_pvu_424 2 2 0.000440836
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_188 3 3 0.00000000238391
Sechium edule LG09 2 CH_sed_43 5 48 0.00000000033222
Schrenkiella parvula ch7-5 2 CH_spa_91 3 3 0.0000000929892
Vigna mungo CM024078.1 2 CH_vmu_358 2 2 0.000387685

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001