Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.VIT family.metal cation transporter (MEB)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr12 | 1 | CH_acertr_337 | 2 | 2 | 0.000070497 |
Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_97 | 3 | 3 | 0.0000000261404 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 1 | CH_amhyb_74 | 3 | 9 | 0.00000356964 |
Arabidopsis thaliana | Chr4 | 1 | CH_ath_129 | 3 | 8 | 0.0000000984871 |
Brassica carinata | ChrC09 | 1 | CH_bca_242 | 3 | 3 | 0.000000113097 |
Brassica carinata | Contig531 | 1 | CH_bca_243 | 3 | 3 | 0.000000113097 |
Brassica napus | A01 | 1 | CH_bna_215 | 3 | 3 | 0.000000187912 |
Brassica napus | C01 | 1 | CH_bna_216 | 3 | 3 | 0.000000187912 |
Brassica oleracea | C7 | 1 | CH_bol_416 | 2 | 2 | 0.000686409 |
Brassica oleracea | C1 | 1 | CH_bol_93 | 3 | 3 | 0.0000000560911 |
Brassica rapa | A01 | 1 | CH_bra_76 | 3 | 3 | 0.0000000276471 |
Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 1 | CH_bvu_191 | 2 | 2 | 0.0000827917 |
Cannabis sativa | NC_044373.1 | 1 | CH_cansat_99 | 4 | 30 | 0.00000002326 |
Coffea canephora | chr1 | 1 | CH_ccan_352 | 2 | 15 | 0.000702697 |
Cardamine hirsuta | Chr7 | 1 | CH_chi_308 | 2 | 2 | 0.000207361 |
Citrullus lanatus | CG_Chr09 | 1 | CH_cla_23 | 4 | 17 | 0.00000000498247 |
Cucumis melo | chr01 | 1 | CH_cme_195 | 2 | 2 | 0.0000667111 |
Chenopodium quinoa | C_Quinoa_Scaffold_2933 | 1 | CH_cqu_444 | 2 | 2 | 0.000284293 |
Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 1 | CH_cqu_445 | 2 | 2 | 0.000284293 |
Capsella rubella | scaffold_7 | 1 | CH_cru_138 | 3 | 4 | 0.000000128297 |
Cucumis sativus L. | chr7 | 1 | CH_csa_247 | 2 | 3 | 0.000250417 |
Daucus carota | DCARv2_Chr1 | 1 | CH_dca_372 | 2 | 2 | 0.000382665 |
Davidia involucrata | GWHABJS00000010 | 1 | CH_din_360 | 2 | 2 | 0.000150038 |
Erigeron canadensis | Conyza_canadensis_scaffold:7 | 1 | CH_eca_141 | 3 | 4 | 0.000000120807 |
Eutrema salsugineum | scaffold_1 | 1 | CH_esa_310 | 2 | 3 | 0.000685305 |
Fragaria x ananassa | Fvb2-2 | 1 | CH_fan_397 | 2 | 2 | 0.000111022 |
Fragaria x ananassa | Fvb2-1 | 1 | CH_fan_398 | 2 | 2 | 0.000111022 |
Fragaria vesca | Fvb2 | 1 | CH_fve_277 | 2 | 2 | 0.0000589102 |
Lupinus albus | Lalb_Chr12 | 1 | CH_lal_71 | 3 | 3 | 0.0000000165269 |
Olea europaea | chr12 | 1 | CH_oeu_257 | 2 | 2 | 0.000160137 |
Punica granatum | NC_045130.1 | 1 | CH_pgr_221 | 2 | 2 | 0.0000750356 |
Pisum sativum | chr4LG4 | 1 | CH_psa_295 | 2 | 2 | 0.00015649 |
Phaseolus vulgaris | Chr10 | 1 | CH_pvu_424 | 2 | 2 | 0.000440836 |
Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_188 | 3 | 3 | 0.00000000238391 |
Sechium edule | LG09 | 1 | CH_sed_43 | 5 | 48 | 0.00000000033222 |
Schrenkiella parvula | ch7-5 | 1 | CH_spa_91 | 3 | 3 | 0.0000000929892 |
Vigna mungo | CM024078.1 | 1 | CH_vmu_358 | 2 | 2 | 0.000387685 |
Acer truncatum | chr12 | 2 | CH_acertr_337 | 2 | 2 | 0.000070497 |
Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_97 | 3 | 3 | 0.0000000261404 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 2 | CH_amhyb_74 | 3 | 9 | 0.00000356964 |
Arabidopsis thaliana | Chr4 | 2 | CH_ath_129 | 3 | 8 | 0.0000000984871 |
Brassica carinata | ChrC09 | 2 | CH_bca_242 | 3 | 3 | 0.000000113097 |
Brassica carinata | Contig531 | 2 | CH_bca_243 | 3 | 3 | 0.000000113097 |
Brassica oleracea | C7 | 2 | CH_bol_416 | 2 | 2 | 0.000686409 |
Brassica oleracea | C1 | 2 | CH_bol_93 | 3 | 3 | 0.0000000560911 |
Brassica rapa | A01 | 2 | CH_bra_76 | 3 | 3 | 0.0000000276471 |
Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 2 | CH_bvu_191 | 2 | 2 | 0.0000827917 |
Cannabis sativa | NC_044373.1 | 2 | CH_cansat_99 | 4 | 30 | 0.00000002326 |
Coffea canephora | chr1 | 2 | CH_ccan_352 | 2 | 15 | 0.000702697 |
Cardamine hirsuta | Chr7 | 2 | CH_chi_308 | 2 | 2 | 0.000207361 |
Citrullus lanatus | CG_Chr09 | 2 | CH_cla_23 | 4 | 17 | 0.00000000498247 |
Cucumis melo | chr01 | 2 | CH_cme_195 | 2 | 2 | 0.0000667111 |
Chenopodium quinoa | C_Quinoa_Scaffold_2933 | 2 | CH_cqu_444 | 2 | 2 | 0.000284293 |
Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 2 | CH_cqu_445 | 2 | 2 | 0.000284293 |
Capsella rubella | scaffold_7 | 2 | CH_cru_138 | 3 | 4 | 0.000000128297 |
Cucumis sativus L. | chr7 | 2 | CH_csa_247 | 2 | 3 | 0.000250417 |
Daucus carota | DCARv2_Chr1 | 2 | CH_dca_372 | 2 | 2 | 0.000382665 |
Davidia involucrata | GWHABJS00000010 | 2 | CH_din_360 | 2 | 2 | 0.000150038 |
Erigeron canadensis | Conyza_canadensis_scaffold:7 | 2 | CH_eca_141 | 3 | 4 | 0.000000120807 |
Eucalyptus grandis | Chr01 | 2 | CH_egr_698 | 2 | 2 | 0.0000585274 |
Eutrema salsugineum | scaffold_1 | 2 | CH_esa_310 | 2 | 3 | 0.000685305 |
Fragaria x ananassa | Fvb2-2 | 2 | CH_fan_397 | 2 | 2 | 0.000111022 |
Fragaria x ananassa | Fvb2-1 | 2 | CH_fan_398 | 2 | 2 | 0.000111022 |
Fragaria vesca | Fvb2 | 2 | CH_fve_277 | 2 | 2 | 0.0000589102 |
Lupinus albus | Lalb_Chr12 | 2 | CH_lal_71 | 3 | 3 | 0.0000000165269 |
Olea europaea | chr12 | 2 | CH_oeu_257 | 2 | 2 | 0.000160137 |
Punica granatum | NC_045130.1 | 2 | CH_pgr_221 | 2 | 2 | 0.0000750356 |
Pisum sativum | chr4LG4 | 2 | CH_psa_295 | 2 | 2 | 0.00015649 |
Phaseolus vulgaris | Chr10 | 2 | CH_pvu_424 | 2 | 2 | 0.000440836 |
Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_188 | 3 | 3 | 0.00000000238391 |
Sechium edule | LG09 | 2 | CH_sed_43 | 5 | 48 | 0.00000000033222 |
Schrenkiella parvula | ch7-5 | 2 | CH_spa_91 | 3 | 3 | 0.0000000929892 |
Vigna mungo | CM024078.1 | 2 | CH_vmu_358 | 2 | 2 | 0.000387685 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |