Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.APC family.amino acid transporter (LAT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 1 CH_aly_411 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_233 2 2 0.000505051
Arabidopsis thaliana Chr1 1 CH_ath_344 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00048 1 CH_atr_253 2 2 0.000238322
Brassica carinata ChrB07 1 CH_bca_364 3 4 0.00000124736
Brassica oleracea C5 1 CH_bol_407 2 2 0.000686409
Brassica rapa A09 1 CH_bra_377 2 2 0.000901558
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_270 2 2 0.00049675
Cannabis sativa NC_044377.1 1 CH_cansat_75 4 7 0.000000000445859
Citrus clementina scaffold_5 1 CH_ccl_49 6 20 0.000000000000678815
Cardamine hirsuta Chr1 1 CH_chi_418 2 2 0.000691204
Carya illinoinensis Chr14 1 CH_cil_534 2 2 0.000619828
Carica papaya supercontig_119 1 CH_cpa_388 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_3107 1 CH_cqu_429 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_2088 1 CH_cqu_430 2 2 0.000284293
Capsella rubella scaffold_1 1 CH_cru_413 2 2 0.000731154
Durio zibethinus NW_019167871.1 1 CH_dzi_105 3 3 0.000000386688
Eutrema salsugineum scaffold_5 1 CH_esa_321 2 2 0.000761499
Fragaria x ananassa Fvb3-2 1 CH_fan_335 3 7 0.0000363595
Fragaria x ananassa Fvb3-1 1 CH_fan_336 3 7 0.0000363595
Fragaria x ananassa Fvb3-4 1 CH_fan_359 3 8 0.0000581662
Fragaria vesca Fvb3 1 CH_fve_227 3 7 0.0000101976
Hydrangea macrophylla Hma1.2p1_0196F.1 1 CH_hma_391 2 2 0.000666519
Lonicera japonica GWHAAZE00000005 1 CH_lonja_635 2 2 0.000898311
Magnolia biondii Chr01 1 CH_mbi_417 2 3 0.000145695
Malus domestica Chr06 1 CH_mdo_158 4 9 0.00000000679835
Malus domestica Chr11 1 CH_mdo_267 3 4 0.00000142347
Manihot esculenta Chromosome03 1 CH_mes_211 3 4 0.0000012527
Nelumbo nucifera chr1 1 CH_nnu_402 2 2 0.000436015
Olea europaea chr16 1 CH_oeu_376 2 2 0.000533789
Oryza sativa ssp. japonica chr03 1 CH_osa_60 4 9 0.00000000194806
Petunia axillaris Peaxi162Scf00100 1 CH_pax_128 3 4 0.00000166295
Prunus persica Pp06 1 CH_ppe_188 3 3 0.000000166944
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_441 3 11 0.0000220106
Rhododendron simsii chr07 1 CH_rsi_248 3 4 0.00000299772
Salix brachista GWHAAZH00000001 1 CH_sbr_383 2 2 0.00063014
Trochodendron aralioides group15 1 CH_tar_16 5 6 0.0000000000000122784
Tripterygium wilfordii NC_052246.1 1 CH_twi_287 2 2 0.000557507
Vitis vinifera chr2 1 CH_vvi_157 3 3 0.000000173574
Zea mays 1 1 CH_zma_92 3 5 0.000000784212
Arabidopsis lyrata scaffold_1 2 CH_aly_411 2 2 0.000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_233 2 2 0.000505051
Arabidopsis thaliana Chr1 2 CH_ath_344 2 2 0.000286492
Amborella trichopoda AmTr_v1.0_scaffold00048 2 CH_atr_253 2 2 0.000238322
Brassica carinata ChrB07 2 CH_bca_364 3 4 0.00000124736
Brassica oleracea C5 2 CH_bol_407 2 2 0.000686409
Brassica rapa A09 2 CH_bra_377 2 2 0.000901558
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_270 2 2 0.00049675
Cannabis sativa NC_044377.1 2 CH_cansat_75 4 7 0.000000000445859
Citrus clementina scaffold_5 2 CH_ccl_49 6 20 0.000000000000678815
Cardamine hirsuta Chr1 2 CH_chi_418 2 2 0.000691204
Carya illinoinensis Chr14 2 CH_cil_534 2 2 0.000619828
Carica papaya supercontig_119 2 CH_cpa_388 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_3107 2 CH_cqu_429 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_2088 2 CH_cqu_430 2 2 0.000284293
Capsella rubella scaffold_1 2 CH_cru_413 2 2 0.000731154
Durio zibethinus NW_019167871.1 2 CH_dzi_105 3 3 0.000000386688
Eutrema salsugineum scaffold_5 2 CH_esa_321 2 2 0.000761499
Fragaria x ananassa Fvb3-2 2 CH_fan_335 3 7 0.0000363595
Fragaria x ananassa Fvb3-1 2 CH_fan_336 3 7 0.0000363595
Fragaria x ananassa Fvb3-4 2 CH_fan_359 3 8 0.0000581662
Fragaria vesca Fvb3 2 CH_fve_227 3 7 0.0000101976
Hydrangea macrophylla Hma1.2p1_0196F.1 2 CH_hma_391 2 2 0.000666519
Lonicera japonica GWHAAZE00000005 2 CH_lonja_635 2 2 0.000898311
Magnolia biondii Chr01 2 CH_mbi_417 2 3 0.000145695
Malus domestica Chr06 2 CH_mdo_158 4 9 0.00000000679835
Malus domestica Chr11 2 CH_mdo_267 3 4 0.00000142347
Manihot esculenta Chromosome03 2 CH_mes_211 3 4 0.0000012527
Nelumbo nucifera chr1 2 CH_nnu_402 2 2 0.000436015
Olea europaea chr16 2 CH_oeu_376 2 2 0.000533789
Oryza sativa ssp. japonica chr03 2 CH_osa_60 4 9 0.00000000194806
Petunia axillaris Peaxi162Scf00100 2 CH_pax_128 3 4 0.00000166295
Prunus persica Pp06 2 CH_ppe_188 3 3 0.000000166944
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_441 3 11 0.0000220106
Rhododendron simsii chr07 2 CH_rsi_248 3 4 0.00000299772
Salix brachista GWHAAZH00000001 2 CH_sbr_383 2 2 0.00063014
Trochodendron aralioides group15 2 CH_tar_16 5 6 0.0000000000000122784
Tripterygium wilfordii NC_052246.1 2 CH_twi_287 2 2 0.000557507
Vitis vinifera chr2 2 CH_vvi_157 3 3 0.000000173574
Zea mays 1 2 CH_zma_92 3 5 0.000000784212

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001