Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.metal cation transporter (NRAMP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_54 4 5 0.000000000183935
Beta vulgaris Scaffold_0007 1 CH_bvu_276 2 2 0.00049675
Camellia sinensis var. sinensis Chr4 1 CH_camsi_492 3 7 0.000024269
Capsicum annuum PGAv.1.6.scaffold1054 1 CH_can_352 2 2 0.000247831
Carica papaya supercontig_64 1 CH_cpa_394 2 2 0.000950661
Durio zibethinus NW_019167826.1 1 CH_dzi_41 4 4 0.0000000000209106
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_532 2 2 0.000942317
Helianthus annuus HanXRQChr05 1 CH_han_239 3 3 0.000000125437
Lotus japonicus chr1 1 CH_lja_103 4 8 0.0000000379726
Lotus japonicus chr4 1 CH_lja_183 3 3 0.00000168747
Lonicera japonica GWHAAZE00000004 1 CH_lonja_58 7 24 0.00000000000000430167
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_224 3 4 0.000000887636
Petunia axillaris Peaxi162Scf00081 1 CH_pax_92 3 3 0.000000148503
Pisum sativum chr5LG3 1 CH_psa_409 2 2 0.000782452
Quercus lobata 9 1 CH_qlo_32 9 14 1.02445e-25
Rhododendron simsii chr09 1 CH_rsi_111 4 4 0.000000000399087
Rhododendron simsii chr08 1 CH_rsi_141 4 6 0.00000000598345
Sequoiadendron giganteum chr1 1 CH_sgi_211 5 6 0.000000000000326159
Sequoiadendron giganteum chr7 1 CH_sgi_589 3 3 0.00000101811
Sequoiadendron giganteum chr3 1 CH_sgi_645 3 4 0.00000407161
Selaginella moellendorffii scaffold_7 1 CH_smo_109 3 15 0.000207797
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_415 2 2 0.000756974
Acer truncatum chr13 2 CH_acertr_54 4 5 0.000000000183935
Beta vulgaris Scaffold_0007 2 CH_bvu_276 2 2 0.00049675
Camellia sinensis var. sinensis Chr4 2 CH_camsi_492 3 7 0.000024269
Capsicum annuum PGAv.1.6.scaffold1054 2 CH_can_352 2 2 0.000247831
Carica papaya supercontig_64 2 CH_cpa_394 2 2 0.000950661
Durio zibethinus NW_019167826.1 2 CH_dzi_41 4 4 0.0000000000209106
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_532 2 2 0.000942317
Helianthus annuus HanXRQChr05 2 CH_han_239 3 3 0.000000125437
Lotus japonicus chr1 2 CH_lja_103 4 8 0.0000000379726
Lotus japonicus chr4 2 CH_lja_183 3 3 0.00000168747
Lonicera japonica GWHAAZE00000004 2 CH_lonja_58 7 24 0.00000000000000430167
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_224 3 4 0.000000887636
Petunia axillaris Peaxi162Scf00081 2 CH_pax_92 3 3 0.000000148503
Pisum sativum chr5LG3 2 CH_psa_409 2 2 0.000782452
Quercus lobata 9 2 CH_qlo_32 9 14 1.02445e-25
Rhododendron simsii chr09 2 CH_rsi_111 4 4 0.000000000399087
Rhododendron simsii chr08 2 CH_rsi_141 4 6 0.00000000598345
Sequoiadendron giganteum chr1 2 CH_sgi_211 5 6 0.000000000000326159
Sequoiadendron giganteum chr7 2 CH_sgi_589 3 3 0.00000101811
Sequoiadendron giganteum chr3 2 CH_sgi_645 3 4 0.00000407161
Selaginella moellendorffii scaffold_7 2 CH_smo_109 3 15 0.000207797
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_415 2 2 0.000756974

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001