Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.APC superfamily.metal cation transporter (NRAMP)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr13 | 1 | CH_acertr_54 | 4 | 5 | 0.000000000183935 |
Beta vulgaris | Scaffold_0007 | 1 | CH_bvu_276 | 2 | 2 | 0.00049675 |
Camellia sinensis var. sinensis | Chr4 | 1 | CH_camsi_492 | 3 | 7 | 0.000024269 |
Capsicum annuum | PGAv.1.6.scaffold1054 | 1 | CH_can_352 | 2 | 2 | 0.000247831 |
Carica papaya | supercontig_64 | 1 | CH_cpa_394 | 2 | 2 | 0.000950661 |
Durio zibethinus | NW_019167826.1 | 1 | CH_dzi_41 | 4 | 4 | 0.0000000000209106 |
Erigeron canadensis | Conyza_canadensis_scaffold:8 | 1 | CH_eca_532 | 2 | 2 | 0.000942317 |
Helianthus annuus | HanXRQChr05 | 1 | CH_han_239 | 3 | 3 | 0.000000125437 |
Lotus japonicus | chr1 | 1 | CH_lja_103 | 4 | 8 | 0.0000000379726 |
Lotus japonicus | chr4 | 1 | CH_lja_183 | 3 | 3 | 0.00000168747 |
Lonicera japonica | GWHAAZE00000004 | 1 | CH_lonja_58 | 7 | 24 | 0.00000000000000430167 |
Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_224 | 3 | 4 | 0.000000887636 |
Petunia axillaris | Peaxi162Scf00081 | 1 | CH_pax_92 | 3 | 3 | 0.000000148503 |
Pisum sativum | chr5LG3 | 1 | CH_psa_409 | 2 | 2 | 0.000782452 |
Quercus lobata | 9 | 1 | CH_qlo_32 | 9 | 14 | 1.02445e-25 |
Rhododendron simsii | chr09 | 1 | CH_rsi_111 | 4 | 4 | 0.000000000399087 |
Rhododendron simsii | chr08 | 1 | CH_rsi_141 | 4 | 6 | 0.00000000598345 |
Sequoiadendron giganteum | chr1 | 1 | CH_sgi_211 | 5 | 6 | 0.000000000000326159 |
Sequoiadendron giganteum | chr7 | 1 | CH_sgi_589 | 3 | 3 | 0.00000101811 |
Sequoiadendron giganteum | chr3 | 1 | CH_sgi_645 | 3 | 4 | 0.00000407161 |
Selaginella moellendorffii | scaffold_7 | 1 | CH_smo_109 | 3 | 15 | 0.000207797 |
Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_415 | 2 | 2 | 0.000756974 |
Acer truncatum | chr13 | 2 | CH_acertr_54 | 4 | 5 | 0.000000000183935 |
Beta vulgaris | Scaffold_0007 | 2 | CH_bvu_276 | 2 | 2 | 0.00049675 |
Camellia sinensis var. sinensis | Chr4 | 2 | CH_camsi_492 | 3 | 7 | 0.000024269 |
Capsicum annuum | PGAv.1.6.scaffold1054 | 2 | CH_can_352 | 2 | 2 | 0.000247831 |
Carica papaya | supercontig_64 | 2 | CH_cpa_394 | 2 | 2 | 0.000950661 |
Durio zibethinus | NW_019167826.1 | 2 | CH_dzi_41 | 4 | 4 | 0.0000000000209106 |
Erigeron canadensis | Conyza_canadensis_scaffold:8 | 2 | CH_eca_532 | 2 | 2 | 0.000942317 |
Helianthus annuus | HanXRQChr05 | 2 | CH_han_239 | 3 | 3 | 0.000000125437 |
Lotus japonicus | chr1 | 2 | CH_lja_103 | 4 | 8 | 0.0000000379726 |
Lotus japonicus | chr4 | 2 | CH_lja_183 | 3 | 3 | 0.00000168747 |
Lonicera japonica | GWHAAZE00000004 | 2 | CH_lonja_58 | 7 | 24 | 0.00000000000000430167 |
Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_224 | 3 | 4 | 0.000000887636 |
Petunia axillaris | Peaxi162Scf00081 | 2 | CH_pax_92 | 3 | 3 | 0.000000148503 |
Pisum sativum | chr5LG3 | 2 | CH_psa_409 | 2 | 2 | 0.000782452 |
Quercus lobata | 9 | 2 | CH_qlo_32 | 9 | 14 | 1.02445e-25 |
Rhododendron simsii | chr09 | 2 | CH_rsi_111 | 4 | 4 | 0.000000000399087 |
Rhododendron simsii | chr08 | 2 | CH_rsi_141 | 4 | 6 | 0.00000000598345 |
Sequoiadendron giganteum | chr1 | 2 | CH_sgi_211 | 5 | 6 | 0.000000000000326159 |
Sequoiadendron giganteum | chr7 | 2 | CH_sgi_589 | 3 | 3 | 0.00000101811 |
Sequoiadendron giganteum | chr3 | 2 | CH_sgi_645 | 3 | 4 | 0.00000407161 |
Selaginella moellendorffii | scaffold_7 | 2 | CH_smo_109 | 3 | 15 | 0.000207797 |
Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_415 | 2 | 2 | 0.000756974 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |