Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.IT superfamily.putative silicon efflux transporter (LSI2)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_11560_HRSCAF_11609 | 1 | CH_ama_102 | 2 | 2 | 0.000258665 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 1 | CH_amhyb_208 | 2 | 2 | 0.000252525 |
| Amborella trichopoda | AmTr_v1.0_scaffold00168 | 1 | CH_atr_319 | 2 | 3 | 0.000714919 |
| Camellia sinensis var. sinensis | Chr1 | 1 | CH_camsi_883 | 2 | 2 | 0.000687821 |
| Corylus avellana | 1 | 1 | CH_cav_96 | 4 | 25 | 0.0000000854023 |
| Carya illinoinensis | Chr06 | 1 | CH_cil_71 | 5 | 9 | 0.000000000000013949 |
| Davidia involucrata | GWHABJS00000004 | 1 | CH_din_473 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019167838.1 | 1 | CH_dzi_384 | 2 | 3 | 0.000834235 |
| Durio zibethinus | NW_019168381.1 | 1 | CH_dzi_385 | 2 | 3 | 0.000834235 |
| Fragaria vesca | Fvb7 | 1 | CH_fve_99 | 3 | 3 | 0.00000000520576 |
| Gossypium hirsutum | D11 | 1 | CH_ghi_205 | 3 | 3 | 0.0000000213895 |
| Gossypium hirsutum | A11 | 1 | CH_ghi_232 | 3 | 4 | 0.0000000855542 |
| Glycine max | Gm16 | 1 | CH_gma_158 | 3 | 3 | 0.0000000756348 |
| Glycine max | Gm09 | 1 | CH_gma_183 | 3 | 4 | 0.000000302516 |
| Gossypium raimondii | Chr07 | 1 | CH_gra_102 | 3 | 3 | 0.00000000431127 |
| Hydrangea macrophylla | Hma1.2p1_0227F.1 | 1 | CH_hma_279 | 2 | 2 | 0.000111086 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_349 | 2 | 2 | 0.0000485661 |
| Malus domestica | Chr07 | 1 | CH_mdo_7 | 7 | 8 | 1.8739e-24 |
| Manihot esculenta | Chromosome06 | 1 | CH_mes_374 | 2 | 2 | 0.000183189 |
| Olea europaea | scaffold1148 | 1 | CH_oeu_394 | 2 | 6 | 0.000800598 |
| Physcomitrium patens | Chr12 | 1 | CH_ppa_183 | 2 | 2 | 0.000183818 |
| Populus trichocarpa | Chr17 | 1 | CH_ptr_204 | 3 | 5 | 0.00000050107 |
| Phaseolus vulgaris | Chr04 | 1 | CH_pvu_136 | 3 | 4 | 0.000000129554 |
| Quercus lobata | 9 | 1 | CH_qlo_58 | 7 | 20 | 1.15623e-19 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 1 | CH_rch_558 | 2 | 3 | 0.000119593 |
| Striga asiatica | scaffold44 | 1 | CH_sas_100 | 2 | 2 | 0.000187611 |
| Simmondsia chinensis | GWHAASQ00000025 | 1 | CH_sci_170 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_925 | 2 | 2 | 0.0000487151 |
| Selaginella moellendorffii | scaffold_20 | 1 | CH_smo_124 | 2 | 2 | 0.000280112 |
| Theobroma cacao | Chromosome_3 | 1 | CH_tca_17 | 6 | 7 | 3.31989e-19 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_132 | 3 | 5 | 0.00000051803 |
| Vigna mungo | CM024077.1 | 1 | CH_vmu_77 | 3 | 3 | 0.0000000250507 |
| Avicennia marina | ScioBoG_11560_HRSCAF_11609 | 2 | CH_ama_102 | 2 | 2 | 0.000258665 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 2 | CH_amhyb_208 | 2 | 2 | 0.000252525 |
| Amborella trichopoda | AmTr_v1.0_scaffold00168 | 2 | CH_atr_319 | 2 | 3 | 0.000714919 |
| Camellia sinensis var. sinensis | Chr1 | 2 | CH_camsi_883 | 2 | 2 | 0.000687821 |
| Corylus avellana | 1 | 2 | CH_cav_96 | 4 | 25 | 0.0000000854023 |
| Carya illinoinensis | Chr06 | 2 | CH_cil_71 | 5 | 9 | 0.000000000000013949 |
| Davidia involucrata | GWHABJS00000004 | 2 | CH_din_473 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019167838.1 | 2 | CH_dzi_384 | 2 | 3 | 0.000834235 |
| Durio zibethinus | NW_019168381.1 | 2 | CH_dzi_385 | 2 | 3 | 0.000834235 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_579 | 3 | 10 | 0.00000616286 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_906 | 2 | 2 | 0.000585274 |
| Fragaria vesca | Fvb7 | 2 | CH_fve_99 | 3 | 3 | 0.00000000520576 |
| Gossypium hirsutum | D11 | 2 | CH_ghi_205 | 3 | 3 | 0.0000000213895 |
| Gossypium hirsutum | A11 | 2 | CH_ghi_232 | 3 | 4 | 0.0000000855542 |
| Glycine max | Gm16 | 2 | CH_gma_158 | 3 | 3 | 0.0000000756348 |
| Glycine max | Gm09 | 2 | CH_gma_183 | 3 | 4 | 0.000000302516 |
| Gossypium raimondii | Chr07 | 2 | CH_gra_102 | 3 | 3 | 0.00000000431127 |
| Hydrangea macrophylla | Hma1.2p1_0227F.1 | 2 | CH_hma_279 | 2 | 2 | 0.000111086 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_349 | 2 | 2 | 0.0000485661 |
| Malus domestica | Chr07 | 2 | CH_mdo_7 | 7 | 8 | 1.8739e-24 |
| Manihot esculenta | Chromosome06 | 2 | CH_mes_374 | 2 | 2 | 0.000183189 |
| Olea europaea | scaffold1148 | 2 | CH_oeu_394 | 2 | 6 | 0.000800598 |
| Physcomitrium patens | Chr12 | 2 | CH_ppa_183 | 2 | 2 | 0.000183818 |
| Populus trichocarpa | Chr17 | 2 | CH_ptr_204 | 3 | 5 | 0.00000050107 |
| Phaseolus vulgaris | Chr04 | 2 | CH_pvu_136 | 3 | 4 | 0.000000129554 |
| Quercus lobata | 9 | 2 | CH_qlo_58 | 7 | 20 | 1.15623e-19 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 2 | CH_rch_558 | 2 | 3 | 0.000119593 |
| Striga asiatica | scaffold44 | 2 | CH_sas_100 | 2 | 2 | 0.000187611 |
| Simmondsia chinensis | GWHAASQ00000025 | 2 | CH_sci_170 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_925 | 2 | 2 | 0.0000487151 |
| Selaginella moellendorffii | scaffold_20 | 2 | CH_smo_124 | 2 | 2 | 0.000280112 |
| Theobroma cacao | Chromosome_3 | 2 | CH_tca_17 | 6 | 7 | 3.31989e-19 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_132 | 3 | 5 | 0.00000051803 |
| Vigna mungo | CM024077.1 | 2 | CH_vmu_77 | 3 | 3 | 0.0000000250507 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |