Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 1 CH_acertr_213 5 9 0.000011843
Camellia sinensis var. sinensis Chr8 1 CH_camsi_437 5 9 0.00000827696
Fragaria x ananassa Fvb6-2 1 CH_fan_189 5 6 0.000000882812
Fragaria vesca Fvb2 1 CH_fve_193 7 31 0.00000143109
Populus trichocarpa Chr02 1 CH_ptr_98 9 22 0.0000000000475229
Salix brachista GWHAAZH00000002 1 CH_sbr_178 6 18 0.00000805441
Sapria himalayana scaffold24_7948270 1 CH_shi_57 3 3 0.0000413747
Acer truncatum chr10 2 CH_acertr_213 5 9 0.000011843
Camellia sinensis var. sinensis Chr8 2 CH_camsi_437 5 9 0.00000827696
Fragaria x ananassa Fvb6-2 2 CH_fan_189 5 6 0.000000882812
Fragaria vesca Fvb2 2 CH_fve_193 7 31 0.00000143109
Populus trichocarpa Chr02 2 CH_ptr_98 9 22 0.0000000000475229
Salix brachista GWHAAZH00000002 2 CH_sbr_178 6 18 0.00000805441
Sapria himalayana scaffold24_7948270 2 CH_shi_57 3 3 0.0000413747

Available child term results

Ontology identifier Description Number of clusters
24.2.3.1 Solute transport.carrier-mediated transport.APC superfamily.SulP family 10
24.2.3.1.1 Solute transport.carrier-mediated transport.APC superfamily.SulP family.sulfate transporter (SULTR) 65
24.2.3.1.2 Solute transport.carrier-mediated transport.APC superfamily.SulP family.molybdate transporter (MOT) 32
24.2.3.10 Solute transport.carrier-mediated transport.APC superfamily.metal cation transporter (NRAMP) 44
24.2.3.11 Solute transport.carrier-mediated transport.APC superfamily.potassium cation transporter (HAK/KUP/KT) 72
24.2.3.2.1 Solute transport.carrier-mediated transport.APC superfamily.NCS-1 family.nucleobase cation transporter (PLUTO) 12
24.2.3.3.1 Solute transport.carrier-mediated transport.APC superfamily.NCS-2 family.purine transporter (AZG) 16
24.2.3.3.2 Solute transport.carrier-mediated transport.APC superfamily.NCS-2 family.solute transporter (NAT) 16
24.2.3.4 Solute transport.carrier-mediated transport.APC superfamily.AAAP family 6
24.2.3.4.1 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (AAP) 136
24.2.3.4.2 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (LHT) 76
24.2.3.4.3 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.proline transporter (ProT) 50
24.2.3.4.4 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (ANT) 17
24.2.3.4.5 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.auxin transporter (AUX/LAX) 10
24.2.3.4.6 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.gamma-aminobutyric acid transporter (GAT) 52
24.2.3.4.7 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.solute transporter (AAAP) 68
24.2.3.5.1 Solute transport.carrier-mediated transport.APC superfamily.APC family.amino acid transporter (LAT) 80
24.2.3.5.2 Solute transport.carrier-mediated transport.APC superfamily.APC family.cationic amino acid transporter (CAT) 42
24.2.3.5.3 Solute transport.carrier-mediated transport.APC superfamily.APC family.gamma-aminobutyric acid transporter (GABP) 43
24.2.3.6 Solute transport.carrier-mediated transport.APC superfamily.borate transporter (BOR) 24
24.2.3.7 Solute transport.carrier-mediated transport.APC superfamily.proton:urea symporter (DUR) 13
24.2.3.8 Solute transport.carrier-mediated transport.APC superfamily.aromatic amino acid transporter (HAAAP) 18
24.2.3.9 Solute transport.carrier-mediated transport.APC superfamily.cation:chloride co-transporter (CCC) 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001