Functional clusters

Information

  • Type MapMan
  • Description Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_259 3 4 0.0000764126
Aquilegia oxysepala CHR03 1 CH_aox_312 3 6 0.000630648
Aquilegia oxysepala CHR03 1 CH_aox_313 3 6 0.000630648
Arabidopsis thaliana Chr3 1 CH_ath_112 5 27 0.0000000398371
Brassica carinata ChrC06 1 CH_bca_446 4 13 0.00000660033
Brassica carinata ChrC06 1 CH_bca_742 3 5 0.000169873
Brassica napus C07 1 CH_bna_253 4 7 0.000000578713
Brassica oleracea C7 1 CH_bol_51 5 10 0.000000000599115
Camellia sinensis var. sinensis Chr7 1 CH_camsi_950 3 7 0.000928942
Cicer arietinum L. Ca_LG7_v3 1 CH_car_120 3 3 0.0000297678
Cicer arietinum L. Ca_LG1_v3 1 CH_car_39 6 38 0.0000000652227
Corylus avellana 2 1 CH_cav_189 3 3 0.0000100521
Citrus clementina scaffold_6 1 CH_ccl_241 3 3 0.0000155449
Ceratophyllum demersum 2 1 CH_cde_137 3 5 0.000214914
Carpinus fangiana Cfa02 1 CH_cfa_119 4 7 0.000000333101
Cardamine hirsuta NSCAFC.115 1 CH_chi_325 3 6 0.000220386
Carya illinoinensis Chr08 1 CH_cil_136 5 6 0.000000000112796
Carya illinoinensis Chr07 1 CH_cil_187 4 4 0.0000000224804
Chenopodium quinoa C_Quinoa_Scaffold_2048 1 CH_cqu_398 3 5 0.000220154
Capsella rubella scaffold_5 1 CH_cru_58 5 6 0.0000000000261613
Davidia involucrata GWHABJS00000008 1 CH_din_82 4 4 0.00000000768446
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_167 4 7 0.000000495903
Eucalyptus grandis Chr09 1 CH_egr_160 7 10 0.00000000000000852002
Fragaria vesca Fvb4 1 CH_fve_32 8 31 0.0000000000000353377
Glycine max Gm17 1 CH_gma_332 3 3 0.0000398142
Glycine max Gm19 1 CH_gma_333 3 3 0.0000398142
Glycine max Gm13 1 CH_gma_86 5 6 0.000000000177985
Helianthus annuus HanXRQChr15 1 CH_han_163 5 7 0.000000000668806
Helianthus annuus HanXRQChr10 1 CH_han_397 4 13 0.0000260583
Helianthus annuus HanXRQChr14 1 CH_han_61 7 14 0.0000000000000769338
Hydrangea macrophylla Hma1.2p1_0849F.1 1 CH_hma_313 3 6 0.000206956
Lonicera japonica GWHAAZE00000006 1 CH_lonja_166 4 4 0.0000000131944
Magnolia biondii Chr10 1 CH_mbi_49 6 8 0.000000000000050352
Malus domestica Chr16 1 CH_mdo_672 3 7 0.000537998
Medicago truncatula chr4 1 CH_mtr_379 4 8 0.00000197198
Medicago truncatula chr1 1 CH_mtr_488 3 4 0.0000335362
Medicago truncatula chr6 1 CH_mtr_53 9 30 1.1519e-16
Nelumbo nucifera chr4 1 CH_nnu_448 3 10 0.000690851
Olea europaea chr8 1 CH_oeu_193 3 4 0.0000768027
Oryza sativa ssp. japonica chr02 1 CH_osa_241 3 6 0.000111162
Prunus persica Pp01 1 CH_ppe_117 5 7 0.000000000393237
Populus trichocarpa Chr14 1 CH_ptr_181 4 5 0.000000170504
Populus trichocarpa Chr15 1 CH_ptr_285 3 3 0.0000357816
Phaseolus vulgaris Chr03 1 CH_pvu_126 4 4 0.0000000374433
Quercus lobata 12 1 CH_qlo_108 7 11 5.81817e-16
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_73 10 72 0.0000000000000135791
Rhododendron simsii chr04 1 CH_rsi_282 3 3 0.0000110626
Rhododendron simsii chr10 1 CH_rsi_315 3 4 0.0000442275
Salvia bowleyana GWHASIU00000004 1 CH_sbo_131 6 48 0.0000000388035
Salix brachista GWHAAZH00000014 1 CH_sbr_61 5 6 0.000000000101059
Sechium edule LG11 1 CH_sed_170 3 3 0.0000278975
Sequoiadendron giganteum chr4 1 CH_sgi_123 9 24 9.49488e-18
Sequoiadendron giganteum chr1 1 CH_sgi_362 6 24 0.0000000022659
Theobroma cacao Chromosome_1 1 CH_tca_245 3 3 0.0000162854
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_67 4 4 0.0000000138287
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_193 3 3 0.0000424336
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_353 3 5 0.000423557
Vigna mungo CM024074.1 1 CH_vmu_28 5 5 0.0000000000105558
Arabidopsis lyrata scaffold_5 2 CH_aly_259 3 4 0.0000764126
Aquilegia oxysepala CHR03 2 CH_aox_312 3 6 0.000630648
Aquilegia oxysepala CHR03 2 CH_aox_313 3 6 0.000630648
Arabidopsis thaliana Chr3 2 CH_ath_112 5 27 0.0000000398371
Brassica carinata ChrC06 2 CH_bca_446 4 13 0.00000660033
Brassica carinata ChrC06 2 CH_bca_742 3 5 0.000169873
Brassica oleracea C7 2 CH_bol_51 5 10 0.000000000599115
Camellia sinensis var. sinensis Chr7 2 CH_camsi_950 3 7 0.000928942
Cicer arietinum L. Ca_LG7_v3 2 CH_car_120 3 3 0.0000297678
Cicer arietinum L. Ca_LG1_v3 2 CH_car_39 6 38 0.0000000652227
Corylus avellana 2 2 CH_cav_189 3 3 0.0000100521
Citrus clementina scaffold_6 2 CH_ccl_241 3 3 0.0000155449
Ceratophyllum demersum 2 2 CH_cde_137 3 5 0.000214914
Carpinus fangiana Cfa02 2 CH_cfa_119 4 7 0.000000333101
Cardamine hirsuta NSCAFC.115 2 CH_chi_325 3 6 0.000220386
Carya illinoinensis Chr08 2 CH_cil_136 5 6 0.000000000112796
Carya illinoinensis Chr07 2 CH_cil_187 4 4 0.0000000224804
Chenopodium quinoa C_Quinoa_Scaffold_2048 2 CH_cqu_398 3 5 0.000220154
Capsella rubella scaffold_5 2 CH_cru_58 5 6 0.0000000000261613
Davidia involucrata GWHABJS00000008 2 CH_din_82 4 4 0.00000000768446
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_167 4 7 0.000000495903
Eucalyptus grandis Chr09 2 CH_egr_160 7 10 0.00000000000000852002
Eucalyptus grandis Chr01 2 CH_egr_428 4 4 0.0000000609143
Fragaria vesca Fvb4 2 CH_fve_32 8 31 0.0000000000000353377
Glycine max Gm17 2 CH_gma_332 3 3 0.0000398142
Glycine max Gm19 2 CH_gma_333 3 3 0.0000398142
Glycine max Gm13 2 CH_gma_86 5 6 0.000000000177985
Helianthus annuus HanXRQChr15 2 CH_han_163 5 7 0.000000000668806
Helianthus annuus HanXRQChr10 2 CH_han_397 4 13 0.0000260583
Helianthus annuus HanXRQChr14 2 CH_han_61 7 14 0.0000000000000769338
Hydrangea macrophylla Hma1.2p1_0849F.1 2 CH_hma_313 3 6 0.000206956
Lotus japonicus chr4 2 CH_lja_230 3 3 0.0000251279
Lonicera japonica GWHAAZE00000006 2 CH_lonja_166 4 4 0.0000000131944
Magnolia biondii Chr10 2 CH_mbi_49 6 8 0.000000000000050352
Malus domestica Chr16 2 CH_mdo_672 3 7 0.000537998
Nelumbo nucifera chr4 2 CH_nnu_448 3 10 0.000690851
Olea europaea chr8 2 CH_oeu_193 3 4 0.0000768027
Oryza sativa ssp. japonica chr02 2 CH_osa_241 3 6 0.000111162
Prunus persica Pp01 2 CH_ppe_117 5 7 0.000000000393237
Populus trichocarpa Chr14 2 CH_ptr_181 4 5 0.000000170504
Populus trichocarpa Chr15 2 CH_ptr_285 3 3 0.0000357816
Phaseolus vulgaris Chr03 2 CH_pvu_126 4 4 0.0000000374433
Quercus lobata 12 2 CH_qlo_108 7 11 5.81817e-16
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_73 10 72 0.0000000000000135791
Rhododendron simsii chr04 2 CH_rsi_282 3 3 0.0000110626
Rhododendron simsii chr10 2 CH_rsi_315 3 4 0.0000442275
Salvia bowleyana GWHASIU00000004 2 CH_sbo_131 6 48 0.0000000388035
Salix brachista GWHAAZH00000014 2 CH_sbr_61 5 6 0.000000000101059
Sechium edule LG11 2 CH_sed_170 3 3 0.0000278975
Sequoiadendron giganteum chr4 2 CH_sgi_123 9 24 9.49488e-18
Sequoiadendron giganteum chr1 2 CH_sgi_362 6 24 0.0000000022659
Theobroma cacao Chromosome_1 2 CH_tca_245 3 3 0.0000162854
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_67 4 4 0.0000000138287
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_193 3 3 0.0000424336
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_353 3 5 0.000423557
Vigna mungo CM024074.1 2 CH_vmu_28 5 5 0.0000000000105558

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001