Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.APC superfamily.potassium cation transporter (HAK/KUP/KT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-7 | 1 | CH_aar_174 | 4 | 30 | 0.000146609 |
| Actinidia chinensis | Lachesis_group16 | 1 | CH_ach_60 | 3 | 3 | 0.0000030099 |
| Brassica napus | C07 | 1 | CH_bna_459 | 3 | 5 | 0.0000550013 |
| Brassica oleracea | C7 | 1 | CH_bol_240 | 3 | 6 | 0.0000365147 |
| Camellia sinensis var. sinensis | Chr12 | 1 | CH_camsi_70 | 6 | 8 | 0.000000000000171615 |
| Corylus avellana | 2 | 1 | CH_cav_106 | 4 | 7 | 0.00000011249 |
| Corylus avellana | 2 | 1 | CH_cav_179 | 3 | 3 | 0.000005996 |
| Coffea canephora | chr5 | 1 | CH_ccan_106 | 4 | 82 | 0.00000127868 |
| Coffea canephora | chr11 | 1 | CH_ccan_190 | 3 | 22 | 0.0000405793 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_160 | 3 | 3 | 0.00000585067 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_372 | 3 | 10 | 0.000699943 |
| Carya illinoinensis | Chr08 | 1 | CH_cil_316 | 3 | 3 | 0.0000210579 |
| Carya illinoinensis | Chr08 | 1 | CH_cil_317 | 3 | 3 | 0.0000210579 |
| Carica papaya | supercontig_53 | 1 | CH_cpa_128 | 3 | 5 | 0.0000223541 |
| Chlamydomonas reinhardtii | chromosome_17 | 1 | CH_cre_21 | 3 | 8 | 0.0000108585 |
| Cucumis sativus L. | chr7 | 1 | CH_csa_176 | 3 | 4 | 0.0000190161 |
| Durio zibethinus | NW_019167893.1 | 1 | CH_dzi_181 | 3 | 4 | 0.0000296341 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_213 | 3 | 3 | 0.0000042479 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_150 | 4 | 4 | 0.00000000471391 |
| Magnolia biondii | Chr19 | 1 | CH_mbi_266 | 4 | 26 | 0.00000929832 |
| Malus domestica | Chr13 | 1 | CH_mdo_201 | 4 | 6 | 0.000000113701 |
| Malus domestica | Chr16 | 1 | CH_mdo_347 | 3 | 3 | 0.0000129079 |
| Malus domestica | Chr10 | 1 | CH_mdo_398 | 3 | 4 | 0.0000516077 |
| Malus domestica | Chr11 | 1 | CH_mdo_590 | 3 | 6 | 0.000257801 |
| Oryza sativa ssp. japonica | chr03 | 1 | CH_osa_291 | 3 | 6 | 0.000192189 |
| Prunus persica | Pp04 | 1 | CH_ppe_296 | 3 | 4 | 0.0000226947 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_163 | 3 | 3 | 0.00000465308 |
| Quercus lobata | 12 | 1 | CH_qlo_150 | 7 | 19 | 0.0000000000000663805 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_97 | 5 | 5 | 0.000000000000498894 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_689 | 3 | 4 | 0.0000219204 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_271 | 3 | 4 | 0.0000274801 |
| Trochodendron aralioides | group2 | 1 | CH_tar_397 | 3 | 7 | 0.000290891 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_94 | 4 | 5 | 0.0000000466288 |
| Vitis vinifera | chr7 | 1 | CH_vvi_162 | 4 | 8 | 0.000000282296 |
| Zea mays | 1 | 1 | CH_zma_58 | 4 | 4 | 0.0000000164116 |
| Aethionema arabicum | LG-7 | 2 | CH_aar_174 | 4 | 30 | 0.000146609 |
| Actinidia chinensis | Lachesis_group16 | 2 | CH_ach_60 | 3 | 3 | 0.0000030099 |
| Brassica oleracea | C7 | 2 | CH_bol_240 | 3 | 6 | 0.0000365147 |
| Camellia sinensis var. sinensis | Chr12 | 2 | CH_camsi_70 | 6 | 8 | 0.000000000000171615 |
| Corylus avellana | 2 | 2 | CH_cav_106 | 4 | 7 | 0.00000011249 |
| Corylus avellana | 2 | 2 | CH_cav_179 | 3 | 3 | 0.000005996 |
| Coffea canephora | chr5 | 2 | CH_ccan_106 | 4 | 82 | 0.00000127868 |
| Coffea canephora | chr11 | 2 | CH_ccan_190 | 3 | 22 | 0.0000405793 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_160 | 3 | 3 | 0.00000585067 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_372 | 3 | 10 | 0.000699943 |
| Carya illinoinensis | Chr08 | 2 | CH_cil_316 | 3 | 3 | 0.0000210579 |
| Carya illinoinensis | Chr08 | 2 | CH_cil_317 | 3 | 3 | 0.0000210579 |
| Carica papaya | supercontig_53 | 2 | CH_cpa_128 | 3 | 5 | 0.0000223541 |
| Chlamydomonas reinhardtii | chromosome_17 | 2 | CH_cre_21 | 3 | 8 | 0.0000108585 |
| Cucumis sativus L. | chr7 | 2 | CH_csa_176 | 3 | 4 | 0.0000190161 |
| Durio zibethinus | NW_019167893.1 | 2 | CH_dzi_181 | 3 | 4 | 0.0000296341 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_373 | 4 | 4 | 0.0000000164842 |
| Eucalyptus grandis | Chr07 | 2 | CH_egr_433 | 5 | 17 | 0.0000000770243 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_617 | 3 | 3 | 0.0000208617 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_213 | 3 | 3 | 0.0000042479 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_150 | 4 | 4 | 0.00000000471391 |
| Magnolia biondii | Chr19 | 2 | CH_mbi_266 | 4 | 26 | 0.00000929832 |
| Malus domestica | Chr13 | 2 | CH_mdo_201 | 4 | 6 | 0.000000113701 |
| Malus domestica | Chr16 | 2 | CH_mdo_347 | 3 | 3 | 0.0000129079 |
| Malus domestica | Chr10 | 2 | CH_mdo_398 | 3 | 4 | 0.0000516077 |
| Malus domestica | Chr11 | 2 | CH_mdo_590 | 3 | 6 | 0.000257801 |
| Oryza sativa ssp. japonica | chr03 | 2 | CH_osa_291 | 3 | 6 | 0.000192189 |
| Prunus persica | Pp04 | 2 | CH_ppe_296 | 3 | 4 | 0.0000226947 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_163 | 3 | 3 | 0.00000465308 |
| Quercus lobata | 12 | 2 | CH_qlo_150 | 7 | 19 | 0.0000000000000663805 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_97 | 5 | 5 | 0.000000000000498894 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_689 | 3 | 4 | 0.0000219204 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_271 | 3 | 4 | 0.0000274801 |
| Trochodendron aralioides | group2 | 2 | CH_tar_397 | 3 | 7 | 0.000290891 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_94 | 4 | 5 | 0.0000000466288 |
| Vitis vinifera | chr7 | 2 | CH_vvi_162 | 4 | 8 | 0.000000282296 |
| Zea mays | 1 | 2 | CH_zma_58 | 4 | 4 | 0.0000000164116 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |