Functional clusters

Information

  • Type MapMan
  • Description Solute transport.channels.AMT family.ammonium transporter (AMT1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 1 CH_aar_275 2 2 0.000912326
Acer truncatum chr2 1 CH_acertr_127 3 3 0.00000007455
Arabidopsis thaliana Chr3 1 CH_ath_355 2 2 0.000286492
Capsicum annuum PGAv.1.6.scaffold4 1 CH_can_353 2 2 0.000247831
Chara braunii BFEA01000437 1 CH_cbr_33 4 14 0.000000796712
Carya illinoinensis Chr13 1 CH_cil_494 2 2 0.000371897
Capsella rubella scaffold_3 1 CH_cru_380 2 2 0.000438693
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_463 2 2 0.000448722
Glycine max Gm10 1 CH_gma_190 3 5 0.000000432146
Gossypium raimondii Chr11 1 CH_gra_446 2 2 0.00080416
Lonicera japonica GWHAAZE00000006 1 CH_lonja_614 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_459 2 2 0.000308404
Marchantia polymorpha scaffold_81 1 CH_mpo_20 4 6 0.00000000424217
Marchantia polymorpha scaffold_77 1 CH_mpo_50 3 4 0.00000409751
Oryza sativa ssp. japonica chr02 1 CH_osa_351 2 4 0.000475289
Physcomitrium patens Chr18 1 CH_ppa_304 2 2 0.000612726
Populus trichocarpa Chr02 1 CH_ptr_547 2 2 0.000867002
Rhododendron simsii chr09 1 CH_rsi_503 2 2 0.000387184
Schrenkiella parvula ch3-2 1 CH_spa_263 2 2 0.000472404
Theobroma cacao Chromosome_5 1 CH_tca_443 2 2 0.000732386
Aethionema arabicum LG-8 2 CH_aar_275 2 2 0.000912326
Acer truncatum chr2 2 CH_acertr_127 3 3 0.00000007455
Arabidopsis thaliana Chr3 2 CH_ath_355 2 2 0.000286492
Capsicum annuum PGAv.1.6.scaffold4 2 CH_can_353 2 2 0.000247831
Chara braunii BFEA01000437 2 CH_cbr_33 4 14 0.000000796712
Carya illinoinensis Chr13 2 CH_cil_494 2 2 0.000371897
Capsella rubella scaffold_3 2 CH_cru_380 2 2 0.000438693
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_463 2 2 0.000448722
Glycine max Gm10 2 CH_gma_190 3 5 0.000000432146
Gossypium raimondii Chr11 2 CH_gra_446 2 2 0.00080416
Lonicera japonica GWHAAZE00000006 2 CH_lonja_614 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_459 2 2 0.000308404
Marchantia polymorpha scaffold_81 2 CH_mpo_20 4 6 0.00000000424217
Marchantia polymorpha scaffold_77 2 CH_mpo_50 3 4 0.00000409751
Oryza sativa ssp. japonica chr02 2 CH_osa_351 2 4 0.000475289
Physcomitrium patens Chr18 2 CH_ppa_304 2 2 0.000612726
Populus trichocarpa Chr02 2 CH_ptr_547 2 2 0.000867002
Rhododendron simsii chr09 2 CH_rsi_503 2 2 0.000387184
Schrenkiella parvula ch3-2 2 CH_spa_263 2 2 0.000472404
Theobroma cacao Chromosome_5 2 CH_tca_443 2 2 0.000732386

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001