Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.DMT superfamily.nucleobase cation transporter (UPS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 1 CH_aar_263 2 3 0.000821031
Actinidia chinensis Lachesis_group12 1 CH_ach_256 2 6 0.00081473
Arabidopsis lyrata scaffold_5 1 CH_aly_58 4 9 0.000000000543369
Avicennia marina ScioBoG_102834_HRSCAF_103055 1 CH_ama_9 4 5 0.0000000000480767
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_699 2 2 0.000628705
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_700 2 2 0.000628705
Arabidopsis thaliana Chr2 1 CH_ath_99 4 35 0.0000000184544
Brassica carinata ChrC05 1 CH_bca_304 3 4 0.000000328987
Brassica rapa A09 1 CH_bra_278 2 2 0.000257588
Cannabis sativa NC_044379.1 1 CH_cansat_280 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold59 1 CH_can_351 2 2 0.000247831
Cicer arietinum L. Ca_LG2_v3 1 CH_car_172 2 2 0.0000778301
Cardamine hirsuta Chr5 1 CH_chi_76 4 10 0.00000000103995
Citrullus lanatus CG_Chr00 1 CH_cla_203 2 2 0.000532269
Cucumis melo chr10 1 CH_cme_246 2 2 0.000200133
Chenopodium quinoa C_Quinoa_Scaffold_1000 1 CH_cqu_150 3 3 0.000000117869
Capsella rubella scaffold_5 1 CH_cru_82 4 10 0.00000000123088
Cucumis sativus L. chr5 1 CH_csa_98 3 3 0.0000000418111
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_87 3 3 0.00000000302034
Fragaria vesca Fvb4 1 CH_fve_98 3 3 0.00000000520576
Glycine max Gm02 1 CH_gma_388 2 2 0.000113867
Gossypium raimondii Chr13 1 CH_gra_340 2 4 0.000321647
Helianthus annuus HanXRQChr08 1 CH_han_442 2 2 0.0000386429
Hydrangea macrophylla Hma1.2p1_0566F.1 1 CH_hma_327 2 3 0.000333241
Lotus japonicus chr2 1 CH_lja_89 3 3 0.00000000767031
Lonicera japonica GWHAAZE00000006 1 CH_lonja_488 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_126 3 3 0.00000000396314
Magnolia biondii Chr19 1 CH_mbi_348 2 2 0.0000485661
Manihot esculenta Chromosome01 1 CH_mes_298 2 2 0.0000610631
Medicago truncatula chr5 1 CH_mtr_492 3 46 0.0000384045
Oryza sativa ssp. japonica chr12 1 CH_osa_88 3 5 0.0000000418359
Pisum sativum chr2LG1 1 CH_psa_52 4 15 0.000000000581116
Populus trichocarpa Chr08 1 CH_ptr_315 2 2 0.0000578001
Phaseolus vulgaris Chr03 1 CH_pvu_367 2 2 0.000220418
Quercus lobata 3 1 CH_qlo_144 5 12 0.0000000000000422033
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_213 3 4 0.00000000953543
Rhododendron simsii chr12 1 CH_rsi_359 2 2 0.0000645307
Striga asiatica scaffold16 1 CH_sas_146 2 2 0.000625371
Sechium edule LG07 1 CH_sed_85 3 3 0.000000152696
Schrenkiella parvula ch2-4 1 CH_spa_277 2 3 0.000708559
Solanum pennellii Spenn-ch05 1 CH_spe_533 2 3 0.000800581
Selenicereus undatus Scaffold_3410 1 CH_sun_211 2 2 0.000217992
Theobroma cacao Chromosome_2 1 CH_tca_425 2 5 0.000732306
Tarenaya hassleriana NW_010961290.1 1 CH_tha_186 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_124 3 9 0.000000721855
Tripterygium wilfordii NC_052233.1 1 CH_twi_223 2 2 0.000167252
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_85 3 3 0.0000000129529
Vigna mungo CM024074.1 1 CH_vmu_269 2 3 0.000193836
Aethionema arabicum LG-2 2 CH_aar_263 2 3 0.000821031
Actinidia chinensis Lachesis_group12 2 CH_ach_256 2 6 0.00081473
Arabidopsis lyrata scaffold_5 2 CH_aly_58 4 9 0.000000000543369
Avicennia marina ScioBoG_102834_HRSCAF_103055 2 CH_ama_9 4 5 0.0000000000480767
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_699 2 2 0.000628705
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_700 2 2 0.000628705
Arabidopsis thaliana Chr2 2 CH_ath_99 4 35 0.0000000184544
Brassica carinata ChrC05 2 CH_bca_304 3 4 0.000000328987
Brassica rapa A09 2 CH_bra_278 2 2 0.000257588
Cannabis sativa NC_044379.1 2 CH_cansat_280 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold59 2 CH_can_351 2 2 0.000247831
Cicer arietinum L. Ca_LG2_v3 2 CH_car_172 2 2 0.0000778301
Cardamine hirsuta Chr5 2 CH_chi_76 4 10 0.00000000103995
Citrullus lanatus CG_Chr00 2 CH_cla_203 2 2 0.000532269
Cucumis melo chr10 2 CH_cme_246 2 2 0.000200133
Chenopodium quinoa C_Quinoa_Scaffold_1000 2 CH_cqu_150 3 3 0.000000117869
Capsella rubella scaffold_5 2 CH_cru_82 4 10 0.00000000123088
Cucumis sativus L. chr5 2 CH_csa_98 3 3 0.0000000418111
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_87 3 3 0.00000000302034
Eucalyptus grandis Chr07 2 CH_egr_881 2 3 0.000526721
Fragaria vesca Fvb4 2 CH_fve_98 3 3 0.00000000520576
Gossypium hirsutum D13 2 CH_ghi_882 2 4 0.000961196
Glycine max Gm02 2 CH_gma_388 2 2 0.000113867
Gossypium raimondii Chr13 2 CH_gra_340 2 4 0.000321647
Helianthus annuus HanXRQChr08 2 CH_han_442 2 2 0.0000386429
Hydrangea macrophylla Hma1.2p1_0566F.1 2 CH_hma_327 2 3 0.000333241
Lotus japonicus chr2 2 CH_lja_89 3 3 0.00000000767031
Lonicera japonica GWHAAZE00000006 2 CH_lonja_488 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_126 3 3 0.00000000396314
Magnolia biondii Chr19 2 CH_mbi_348 2 2 0.0000485661
Manihot esculenta Chromosome01 2 CH_mes_298 2 2 0.0000610631
Oryza sativa ssp. japonica chr12 2 CH_osa_88 3 5 0.0000000418359
Pisum sativum chr2LG1 2 CH_psa_52 4 15 0.000000000581116
Populus trichocarpa Chr08 2 CH_ptr_315 2 2 0.0000578001
Phaseolus vulgaris Chr03 2 CH_pvu_367 2 2 0.000220418
Quercus lobata 3 2 CH_qlo_144 5 12 0.0000000000000422033
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_213 3 4 0.00000000953543
Rhododendron simsii chr12 2 CH_rsi_359 2 2 0.0000645307
Striga asiatica scaffold16 2 CH_sas_146 2 2 0.000625371
Sechium edule LG07 2 CH_sed_85 3 3 0.000000152696
Schrenkiella parvula ch2-4 2 CH_spa_277 2 3 0.000708559
Solanum pennellii Spenn-ch05 2 CH_spe_533 2 3 0.000800581
Selenicereus undatus Scaffold_3410 2 CH_sun_211 2 2 0.000217992
Theobroma cacao Chromosome_2 2 CH_tca_425 2 5 0.000732306
Tarenaya hassleriana NW_010961290.1 2 CH_tha_186 2 2 0.000419082
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_124 3 9 0.000000721855
Tripterygium wilfordii NC_052233.1 2 CH_twi_223 2 2 0.000167252
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_85 3 3 0.0000000129529
Vigna mungo CM024074.1 2 CH_vmu_269 2 3 0.000193836

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001