Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (AAP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group10 1 CH_ach_17 4 4 0.000000000875261
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_224 5 19 0.000000106671
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_301 5 30 0.00000129957
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_322 4 10 0.00000300588
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 1 CH_arhy_402 3 3 0.0000218007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 1 CH_arhy_403 3 3 0.0000218007
Amborella trichopoda AmTr_v1.0_scaffold00071 1 CH_atr_143 3 7 0.0000397203
Brassica carinata ChrC07 1 CH_bca_375 3 3 0.0000015765
Brassica carinata ChrC05 1 CH_bca_503 3 5 0.0000157591
Brassica napus A06 1 CH_bna_320 3 3 0.00000308919
Brassica napus C05 1 CH_bna_379 3 4 0.000012354
Brassica oleracea C5 1 CH_bol_145 3 3 0.00000130772
Brassica rapa A06 1 CH_bra_130 3 3 0.00000188
Camellia sinensis var. sinensis Chr5 1 CH_camsi_580 3 7 0.0000749874
Cannabis sativa NC_044377.1 1 CH_cansat_39 5 6 0.000000000000210833
Capsicum annuum PGAv.1.6.scaffold623 1 CH_can_40 5 6 0.0000000000000440182
Cicer arietinum L. Ca_LG5_v3 1 CH_car_98 4 15 0.0000058776
Coffea canephora chr5 1 CH_ccan_118 3 15 0.0000036041
Carpinus fangiana Cfa07 1 CH_cfa_116 3 3 0.000000301137
Carya illinoinensis Chr15 1 CH_cil_128 6 26 0.0000000000582918
Carica papaya supercontig_12 1 CH_cpa_87 3 3 0.000000759191
Capsella rubella scaffold_6 1 CH_cru_180 3 3 0.00000132315
Daucus carota DCARv2_Chr1 1 CH_dca_111 4 8 0.0000000990258
Davidia involucrata GWHABJS00000001 1 CH_din_77 4 6 0.00000000563274
Eucalyptus grandis Chr08 1 CH_egr_60 10 14 7.48439e-24
Erythranthe guttata scaffold_14 1 CH_egut_91 4 4 0.000000000573364
Fragaria x ananassa Fvb2-1 1 CH_fan_220 3 3 0.00000208514
Fragaria vesca Fvb2 1 CH_fve_165 3 3 0.000000437284
Glycine max Gm18 1 CH_gma_269 3 3 0.00000971367
Hydrangea macrophylla Hma1.2p1_0193F.1 1 CH_hma_63 3 3 0.000000370226
Lotus japonicus chr1 1 CH_lja_81 4 4 0.00000000425217
Lotus japonicus chr6 1 CH_lja_94 4 5 0.000000021251
Magnolia biondii Chr06 1 CH_mbi_253 3 5 0.00000583585
Malus domestica Chr15 1 CH_mdo_298 3 5 0.00000355821
Manihot esculenta Chromosome18 1 CH_mes_396 3 11 0.000263397
Medicago truncatula chr3 1 CH_mtr_164 5 8 0.000000000141965
Medicago truncatula chr1 1 CH_mtr_214 4 4 0.00000000494222
Medicago truncatula chr3 1 CH_mtr_437 3 3 0.00000925259
Medicago truncatula chr3 1 CH_mtr_438 3 3 0.00000925259
Medicago truncatula chr1 1 CH_mtr_484 4 21 0.000029363
Nelumbo nucifera chr1 1 CH_nnu_36 5 10 0.00000000000878495
Olea europaea scaffold915 1 CH_oeu_29 4 4 0.000000000456771
Oryza sativa ssp. japonica chr12 1 CH_osa_407 4 67 0.000955363
Punica granatum NC_045133.1 1 CH_pgr_14 7 9 5.78815e-18
Prunus persica Pp01 1 CH_ppe_113 4 4 0.000000000261541
Pisum sativum chr6LG2 1 CH_psa_109 5 20 0.000000121664
Pisum sativum chr5LG3 1 CH_psa_183 3 3 0.0000165715
Pisum sativum chr5LG3 1 CH_psa_254 4 24 0.000122607
Pisum sativum chr6LG2 1 CH_psa_51 7 54 0.000000000557586
Papaver somniferum NC_039367.1 1 CH_pso_177 4 6 0.0000000105232
Papaver somniferum NW_020622270.1 1 CH_pso_390 3 5 0.0000249178
Populus trichocarpa Chr11 1 CH_ptr_274 3 4 0.000019417
Phaseolus vulgaris Chr06 1 CH_pvu_111 4 5 0.0000000181988
Quercus lobata 8 1 CH_qlo_158 6 21 0.000000000000206549
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_380 3 5 0.00000285997
Rhododendron simsii chr04 1 CH_rsi_272 3 4 0.00000714406
Salvia bowleyana GWHASIU00000004 1 CH_sbo_211 4 36 0.00000348068
Salix brachista GWHAAZH00000016 1 CH_sbr_170 3 3 0.00000486036
Salix brachista GWHAAZH00000011 1 CH_sbr_171 3 3 0.00000486036
Sechium edule LG14 1 CH_sed_16 6 6 7.13805e-17
Sequoiadendron giganteum chr7 1 CH_sgi_581 3 3 0.000000783163
Sequoiadendron giganteum chr3 1 CH_sgi_582 3 3 0.000000783163
Selaginella moellendorffii scaffold_26 1 CH_smo_148 2 2 0.000560224
Solanum pennellii Spenn-ch07 1 CH_spe_564 2 2 0.00093406
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_137 3 3 0.00000141825
Vigna mungo CM024075.1 1 CH_vmu_68 4 5 0.0000000195982
Vanilla planifolia CM028154.1 1 CH_vpl_18 5 6 0.0000000000114893
Vitis vinifera chr4 1 CH_vvi_69 5 6 0.00000000000931909
Zea mays 10 1 CH_zma_80 4 9 0.00000036893
Actinidia chinensis Lachesis_group10 2 CH_ach_17 4 4 0.000000000875261
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_224 5 19 0.000000106671
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_301 5 30 0.00000129957
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_322 4 10 0.00000300588
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 2 CH_arhy_402 3 3 0.0000218007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.01 2 CH_arhy_403 3 3 0.0000218007
Amborella trichopoda AmTr_v1.0_scaffold00071 2 CH_atr_143 3 7 0.0000397203
Brassica carinata ChrC07 2 CH_bca_375 3 3 0.0000015765
Brassica carinata ChrC05 2 CH_bca_503 3 5 0.0000157591
Brassica oleracea C5 2 CH_bol_145 3 3 0.00000130772
Brassica rapa A06 2 CH_bra_130 3 3 0.00000188
Camellia sinensis var. sinensis Chr5 2 CH_camsi_580 3 7 0.0000749874
Cannabis sativa NC_044377.1 2 CH_cansat_39 5 6 0.000000000000210833
Capsicum annuum PGAv.1.6.scaffold623 2 CH_can_40 5 6 0.0000000000000440182
Cicer arietinum L. Ca_LG5_v3 2 CH_car_98 4 15 0.0000058776
Coffea canephora chr5 2 CH_ccan_118 3 15 0.0000036041
Carpinus fangiana Cfa07 2 CH_cfa_116 3 3 0.000000301137
Carya illinoinensis Chr15 2 CH_cil_128 6 26 0.0000000000582918
Carica papaya supercontig_12 2 CH_cpa_87 3 3 0.000000759191
Capsella rubella scaffold_6 2 CH_cru_180 3 3 0.00000132315
Daucus carota DCARv2_Chr1 2 CH_dca_111 4 8 0.0000000990258
Davidia involucrata GWHABJS00000001 2 CH_din_77 4 6 0.00000000563274
Eucalyptus grandis Chr03 2 CH_egr_414 6 37 0.0000000472417
Eucalyptus grandis Chr06 2 CH_egr_496 4 6 0.000000417818
Eucalyptus grandis Chr06 2 CH_egr_510 5 24 0.00000102653
Eucalyptus grandis Chr08 2 CH_egr_60 10 14 7.48439e-24
Eucalyptus grandis Chr06 2 CH_egr_636 3 3 0.0000307478
Eucalyptus grandis Chr06 2 CH_egr_814 3 5 0.000307042
Erythranthe guttata scaffold_14 2 CH_egut_91 4 4 0.000000000573364
Fragaria x ananassa Fvb2-1 2 CH_fan_220 3 3 0.00000208514
Fragaria vesca Fvb2 2 CH_fve_165 3 3 0.000000437284
Glycine max Gm18 2 CH_gma_269 3 3 0.00000971367
Hydrangea macrophylla Hma1.2p1_0193F.1 2 CH_hma_63 3 3 0.000000370226
Lotus japonicus chr1 2 CH_lja_81 4 4 0.00000000425217
Lotus japonicus chr6 2 CH_lja_94 4 5 0.000000021251
Magnolia biondii Chr06 2 CH_mbi_253 3 5 0.00000583585
Malus domestica Chr15 2 CH_mdo_298 3 5 0.00000355821
Manihot esculenta Chromosome18 2 CH_mes_396 3 11 0.000263397
Nelumbo nucifera chr1 2 CH_nnu_36 5 10 0.00000000000878495
Olea europaea scaffold915 2 CH_oeu_29 4 4 0.000000000456771
Oryza sativa ssp. japonica chr12 2 CH_osa_407 4 67 0.000955363
Punica granatum NC_045133.1 2 CH_pgr_14 7 9 5.78815e-18
Prunus persica Pp01 2 CH_ppe_113 4 4 0.000000000261541
Pisum sativum chr6LG2 2 CH_psa_109 5 20 0.000000121664
Pisum sativum chr5LG3 2 CH_psa_183 3 3 0.0000165715
Pisum sativum chr5LG3 2 CH_psa_254 4 24 0.000122607
Pisum sativum chr6LG2 2 CH_psa_51 7 54 0.000000000557586
Papaver somniferum NC_039367.1 2 CH_pso_177 4 6 0.0000000105232
Papaver somniferum NW_020622270.1 2 CH_pso_390 3 5 0.0000249178
Populus trichocarpa Chr11 2 CH_ptr_274 3 4 0.000019417
Phaseolus vulgaris Chr06 2 CH_pvu_111 4 5 0.0000000181988
Quercus lobata 8 2 CH_qlo_158 6 21 0.000000000000206549
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_380 3 5 0.00000285997
Rhododendron simsii chr04 2 CH_rsi_272 3 4 0.00000714406
Salvia bowleyana GWHASIU00000004 2 CH_sbo_211 4 36 0.00000348068
Salix brachista GWHAAZH00000016 2 CH_sbr_170 3 3 0.00000486036
Salix brachista GWHAAZH00000011 2 CH_sbr_171 3 3 0.00000486036
Sechium edule LG14 2 CH_sed_16 6 6 7.13805e-17
Sequoiadendron giganteum chr7 2 CH_sgi_581 3 3 0.000000783163
Sequoiadendron giganteum chr3 2 CH_sgi_582 3 3 0.000000783163
Selaginella moellendorffii scaffold_26 2 CH_smo_148 2 2 0.000560224
Solanum pennellii Spenn-ch07 2 CH_spe_564 2 2 0.00093406
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_137 3 3 0.00000141825
Vigna mungo CM024075.1 2 CH_vmu_68 4 5 0.0000000195982
Vanilla planifolia CM028154.1 2 CH_vpl_18 5 6 0.0000000000114893
Vitis vinifera chr4 2 CH_vvi_69 5 6 0.00000000000931909
Zea mays 10 2 CH_zma_80 4 9 0.00000036893

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001