Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (EDS5)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_303 2 2 0.000070497
Aquilegia oxysepala CHR05 1 CH_aox_157 2 2 0.0000801989
Camellia sinensis var. sinensis Chr4 1 CH_camsi_540 2 2 0.0000458547
Cicer arietinum L. Ca_LG6_v3 1 CH_car_210 2 3 0.000233481
Corylus avellana 1 1 CH_cav_204 3 27 0.0000257679
Citrus clementina scaffold_8 1 CH_ccl_304 2 2 0.0000820311
Carpinus fangiana Cfa02 1 CH_cfa_146 3 13 0.00000245979
Carya illinoinensis Chr05 1 CH_cil_216 3 4 0.0000000922028
Cucumis melo chr11 1 CH_cme_183 2 2 0.0000667111
Chenopodium quinoa C_Quinoa_Scaffold_1257 1 CH_cqu_158 3 4 0.000000134699
Cucumis sativus L. chr2 1 CH_csa_206 2 2 0.0000834759
Erythranthe guttata scaffold_2 1 CH_egut_300 2 2 0.0000728147
Fragaria vesca Fvb2 1 CH_fve_266 2 2 0.0000589102
Gossypium hirsutum A03 1 CH_ghi_201 3 3 0.0000000213895
Gossypium hirsutum D02 1 CH_ghi_202 3 3 0.0000000213895
Glycine max Gm11 1 CH_gma_361 2 3 0.000113865
Gossypium raimondii Chr05 1 CH_gra_98 3 3 0.00000000431127
Hydrangea macrophylla Hma1.2p1_0066F.1 1 CH_hma_231 2 2 0.000111086
Lotus japonicus chr3 1 CH_lja_85 3 3 0.00000000767031
Lonicera japonica GWHAAZE00000005 1 CH_lonja_381 2 2 0.0000598874
Manihot esculenta Chromosome11 1 CH_mes_363 2 2 0.000183189
Medicago truncatula chr4 1 CH_mtr_77 5 9 0.00000000000000269301
Punica granatum NC_045128.1 1 CH_pgr_91 3 3 0.0000000337834
Prunus persica Pp08 1 CH_ppe_390 2 3 0.00022378
Pisum sativum chr7LG7 1 CH_psa_423 2 4 0.000938861
Populus trichocarpa Chr09 1 CH_ptr_306 2 2 0.0000578001
Phaseolus vulgaris Chr11 1 CH_pvu_279 2 2 0.0000734727
Quercus lobata 11 1 CH_qlo_353 3 4 0.0000000159933
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_318 3 12 0.000000524365
Salix brachista GWHAAZH00000004 1 CH_sbr_336 2 2 0.000378084
Salix brachista GWHAAZH00000009 1 CH_sbr_337 2 2 0.000378084
Sechium edule LG01 1 CH_sed_253 2 2 0.000214026
Solanum tuberosum ST4.03ch01 1 CH_stu_464 2 2 0.000153736
Theobroma cacao Chromosome_2 1 CH_tca_56 4 5 0.00000000000589309
Tarenaya hassleriana NW_010963495.1 1 CH_tha_35 3 3 0.00000000731817
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_8 5 5 2.4631e-16
Tripterygium wilfordii NC_052233.1 1 CH_twi_203 2 3 0.000167247
Vitis vinifera chr3 1 CH_vvi_268 2 2 0.000076063
Acer truncatum chr5 2 CH_acertr_303 2 2 0.000070497
Aquilegia oxysepala CHR05 2 CH_aox_157 2 2 0.0000801989
Camellia sinensis var. sinensis Chr4 2 CH_camsi_540 2 2 0.0000458547
Cicer arietinum L. Ca_LG6_v3 2 CH_car_210 2 3 0.000233481
Corylus avellana 1 2 CH_cav_204 3 27 0.0000257679
Citrus clementina scaffold_8 2 CH_ccl_304 2 2 0.0000820311
Carpinus fangiana Cfa02 2 CH_cfa_146 3 13 0.00000245979
Carya illinoinensis Chr05 2 CH_cil_216 3 4 0.0000000922028
Cucumis melo chr11 2 CH_cme_183 2 2 0.0000667111
Chenopodium quinoa C_Quinoa_Scaffold_1257 2 CH_cqu_158 3 4 0.000000134699
Cucumis sativus L. chr2 2 CH_csa_206 2 2 0.0000834759
Eucalyptus grandis Chr09 2 CH_egr_776 2 2 0.000175582
Erythranthe guttata scaffold_2 2 CH_egut_300 2 2 0.0000728147
Fragaria vesca Fvb2 2 CH_fve_266 2 2 0.0000589102
Gossypium hirsutum A03 2 CH_ghi_201 3 3 0.0000000213895
Gossypium hirsutum D02 2 CH_ghi_202 3 3 0.0000000213895
Glycine max Gm11 2 CH_gma_361 2 3 0.000113865
Gossypium raimondii Chr05 2 CH_gra_98 3 3 0.00000000431127
Hydrangea macrophylla Hma1.2p1_0066F.1 2 CH_hma_231 2 2 0.000111086
Lotus japonicus chr3 2 CH_lja_85 3 3 0.00000000767031
Lonicera japonica GWHAAZE00000005 2 CH_lonja_381 2 2 0.0000598874
Manihot esculenta Chromosome11 2 CH_mes_363 2 2 0.000183189
Punica granatum NC_045128.1 2 CH_pgr_91 3 3 0.0000000337834
Prunus persica Pp08 2 CH_ppe_390 2 3 0.00022378
Pisum sativum chr7LG7 2 CH_psa_423 2 4 0.000938861
Populus trichocarpa Chr09 2 CH_ptr_306 2 2 0.0000578001
Phaseolus vulgaris Chr11 2 CH_pvu_279 2 2 0.0000734727
Quercus lobata 11 2 CH_qlo_353 3 4 0.0000000159933
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_318 3 12 0.000000524365
Salix brachista GWHAAZH00000004 2 CH_sbr_336 2 2 0.000378084
Salix brachista GWHAAZH00000009 2 CH_sbr_337 2 2 0.000378084
Sechium edule LG01 2 CH_sed_253 2 2 0.000214026
Solanum tuberosum ST4.03ch01 2 CH_stu_464 2 2 0.000153736
Theobroma cacao Chromosome_2 2 CH_tca_56 4 5 0.00000000000589309
Tarenaya hassleriana NW_010963495.1 2 CH_tha_35 3 3 0.00000000731817
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_8 5 5 2.4631e-16
Tripterygium wilfordii NC_052233.1 2 CH_twi_203 2 3 0.000167247
Vitis vinifera chr3 2 CH_vvi_268 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001