Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.MFS superfamily.SP family.polyol/monosaccharide transporter (PLT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 1 | CH_aar_90 | 3 | 4 | 0.00000174767 |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_451 | 2 | 2 | 0.000990066 |
| Aquilegia oxysepala | CHR06 | 1 | CH_aox_18 | 5 | 7 | 0.000000000000364859 |
| Amborella trichopoda | AmTr_v1.0_scaffold00059 | 1 | CH_atr_130 | 3 | 4 | 0.00000318009 |
| Brassica napus | A07 | 1 | CH_bna_297 | 3 | 4 | 0.00000200071 |
| Brassica rapa | A07 | 1 | CH_bra_151 | 3 | 6 | 0.00000663264 |
| Camellia sinensis var. sinensis | Chr4 | 1 | CH_camsi_51 | 6 | 8 | 0.00000000000000237032 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_77 | 6 | 15 | 0.000000000000422928 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_398 | 2 | 2 | 0.000984963 |
| Corylus avellana | 8 | 1 | CH_cav_82 | 4 | 9 | 0.0000000214468 |
| Coffea canephora | chr5 | 1 | CH_ccan_250 | 3 | 56 | 0.000148343 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_196 | 3 | 8 | 0.0000404307 |
| Carya illinoinensis | Chr05 | 1 | CH_cil_139 | 4 | 4 | 0.000000000150036 |
| Citrullus lanatus | CG_Chr02 | 1 | CH_cla_77 | 3 | 4 | 0.00000396555 |
| Cucumis melo | chr01 | 1 | CH_cme_16 | 7 | 14 | 4.08403e-17 |
| Carica papaya | supercontig_62 | 1 | CH_cpa_99 | 3 | 5 | 0.00000271056 |
| Cucumis sativus L. | chr7 | 1 | CH_csa_17 | 7 | 9 | 1.6462e-18 |
| Davidia involucrata | GWHABJS00000005 | 1 | CH_din_125 | 3 | 3 | 0.000000131319 |
| Eucalyptus grandis | Chr11 | 1 | CH_egr_154 | 6 | 7 | 0.00000000000000419203 |
| Gossypium hirsutum | A01 | 1 | CH_ghi_149 | 4 | 4 | 0.000000000505751 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_150 | 4 | 4 | 0.000000000505751 |
| Glycine max | Gm11 | 1 | CH_gma_37 | 6 | 8 | 0.0000000000000026921 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_83 | 4 | 4 | 0.000000000228831 |
| Lonicera japonica | GWHAAZE00000009 | 1 | CH_lonja_261 | 3 | 3 | 0.00000195829 |
| Magnolia biondii | Chr08 | 1 | CH_mbi_241 | 3 | 8 | 0.00000396109 |
| Malus domestica | Chr05 | 1 | CH_mdo_252 | 4 | 12 | 0.000000858313 |
| Malus domestica | Chr10 | 1 | CH_mdo_4 | 10 | 13 | 6.44593e-28 |
| Punica granatum | NC_045128.1 | 1 | CH_pgr_11 | 8 | 12 | 2.68646e-20 |
| Prunus persica | Pp08 | 1 | CH_ppe_60 | 9 | 50 | 0.00000000000000290154 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_164 | 3 | 5 | 0.00000489638 |
| Phaseolus vulgaris | Chr02 | 1 | CH_pvu_104 | 4 | 5 | 0.00000000811882 |
| Phaseolus vulgaris | Chr11 | 1 | CH_pvu_206 | 3 | 3 | 0.00000368443 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_641 | 3 | 23 | 0.000235979 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_297 | 3 | 8 | 0.0000195741 |
| Striga asiatica | scaffold94 | 1 | CH_sas_6 | 4 | 6 | 0.0000000036308 |
| Sechium edule | LG04 | 1 | CH_sed_111 | 3 | 3 | 0.000000916174 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_117 | 6 | 7 | 3.63034e-18 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_633 | 3 | 5 | 0.00000298946 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_192 | 3 | 4 | 0.000000723385 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_97 | 4 | 4 | 0.000000000199858 |
| Trochodendron aralioides | group11 | 1 | CH_tar_21 | 5 | 5 | 0.0000000000000450242 |
| Tripterygium wilfordii | NC_052238.1 | 1 | CH_twi_142 | 3 | 4 | 0.00000678661 |
| Utricularia gibba | unitig_21 | 1 | CH_ugi_287 | 2 | 2 | 0.000734592 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_292 | 4 | 64 | 0.000190066 |
| Vigna mungo | CM024074.1 | 1 | CH_vmu_14 | 6 | 7 | 8.87849e-16 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_54 | 4 | 17 | 0.000000201229 |
| Zea mays | 7 | 1 | CH_zma_122 | 3 | 4 | 0.00000878222 |
| Zea mays | 4 | 1 | CH_zma_132 | 3 | 5 | 0.0000219495 |
| Aethionema arabicum | LG-8 | 2 | CH_aar_90 | 3 | 4 | 0.00000174767 |
| Arabidopsis lyrata | scaffold_3 | 2 | CH_aly_451 | 2 | 2 | 0.000990066 |
| Aquilegia oxysepala | CHR06 | 2 | CH_aox_18 | 5 | 7 | 0.000000000000364859 |
| Amborella trichopoda | AmTr_v1.0_scaffold00059 | 2 | CH_atr_130 | 3 | 4 | 0.00000318009 |
| Brassica rapa | A07 | 2 | CH_bra_151 | 3 | 6 | 0.00000663264 |
| Camellia sinensis var. sinensis | Chr4 | 2 | CH_camsi_51 | 6 | 8 | 0.00000000000000237032 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_77 | 6 | 15 | 0.000000000000422928 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_398 | 2 | 2 | 0.000984963 |
| Corylus avellana | 8 | 2 | CH_cav_82 | 4 | 9 | 0.0000000214468 |
| Coffea canephora | chr5 | 2 | CH_ccan_250 | 3 | 56 | 0.000148343 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_196 | 3 | 8 | 0.0000404307 |
| Carya illinoinensis | Chr05 | 2 | CH_cil_139 | 4 | 4 | 0.000000000150036 |
| Citrullus lanatus | CG_Chr02 | 2 | CH_cla_77 | 3 | 4 | 0.00000396555 |
| Cucumis melo | chr01 | 2 | CH_cme_16 | 7 | 14 | 4.08403e-17 |
| Carica papaya | supercontig_62 | 2 | CH_cpa_99 | 3 | 5 | 0.00000271056 |
| Cucumis sativus L. | chr7 | 2 | CH_csa_17 | 7 | 9 | 1.6462e-18 |
| Davidia involucrata | GWHABJS00000005 | 2 | CH_din_125 | 3 | 3 | 0.000000131319 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_154 | 6 | 7 | 0.00000000000000419203 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_622 | 3 | 4 | 0.0000234214 |
| Eucalyptus grandis | Chr07 | 2 | CH_egr_623 | 3 | 4 | 0.0000234214 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_149 | 4 | 4 | 0.000000000505751 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_150 | 4 | 4 | 0.000000000505751 |
| Glycine max | Gm11 | 2 | CH_gma_37 | 6 | 8 | 0.0000000000000026921 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_83 | 4 | 4 | 0.000000000228831 |
| Lotus japonicus | chr4 | 2 | CH_lja_220 | 3 | 4 | 0.0000111643 |
| Lotus japonicus | chr2 | 2 | CH_lja_221 | 3 | 4 | 0.0000111643 |
| Lonicera japonica | GWHAAZE00000009 | 2 | CH_lonja_261 | 3 | 3 | 0.00000195829 |
| Magnolia biondii | Chr08 | 2 | CH_mbi_241 | 3 | 8 | 0.00000396109 |
| Malus domestica | Chr05 | 2 | CH_mdo_252 | 4 | 12 | 0.000000858313 |
| Malus domestica | Chr10 | 2 | CH_mdo_4 | 10 | 13 | 6.44593e-28 |
| Punica granatum | NC_045128.1 | 2 | CH_pgr_11 | 8 | 12 | 2.68646e-20 |
| Prunus persica | Pp08 | 2 | CH_ppe_60 | 9 | 50 | 0.00000000000000290154 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_164 | 3 | 5 | 0.00000489638 |
| Phaseolus vulgaris | Chr02 | 2 | CH_pvu_104 | 4 | 5 | 0.00000000811882 |
| Phaseolus vulgaris | Chr11 | 2 | CH_pvu_206 | 3 | 3 | 0.00000368443 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_641 | 3 | 23 | 0.000235979 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_297 | 3 | 8 | 0.0000195741 |
| Striga asiatica | scaffold94 | 2 | CH_sas_6 | 4 | 6 | 0.0000000036308 |
| Sechium edule | LG04 | 2 | CH_sed_111 | 3 | 3 | 0.000000916174 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_117 | 6 | 7 | 3.63034e-18 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_633 | 3 | 5 | 0.00000298946 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_192 | 3 | 4 | 0.000000723385 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_97 | 4 | 4 | 0.000000000199858 |
| Trochodendron aralioides | group11 | 2 | CH_tar_21 | 5 | 5 | 0.0000000000000450242 |
| Tripterygium wilfordii | NC_052238.1 | 2 | CH_twi_142 | 3 | 4 | 0.00000678661 |
| Utricularia gibba | unitig_21 | 2 | CH_ugi_287 | 2 | 2 | 0.000734592 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_292 | 4 | 64 | 0.000190066 |
| Vigna mungo | CM024074.1 | 2 | CH_vmu_14 | 6 | 7 | 8.87849e-16 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_54 | 4 | 17 | 0.000000201229 |
| Zea mays | 7 | 2 | CH_zma_122 | 3 | 4 | 0.00000878222 |
| Zea mays | 4 | 2 | CH_zma_132 | 3 | 5 | 0.0000219495 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |