Functional clusters
Information
- Type MapMan
- Description Solute transport.channels.anion channel (QUAC/ALMT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 1 | CH_acertr_204 | 3 | 4 | 0.00000852597 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 1 | CH_amhyb_45 | 4 | 12 | 0.000000291662 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 1 | CH_arhy_374 | 3 | 3 | 0.00000879959 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 1 | CH_arhy_375 | 3 | 3 | 0.00000879959 |
| Brassica carinata | ChrC07 | 1 | CH_bca_130 | 4 | 4 | 0.00000000153441 |
| Brassica carinata | ChrB03 | 1 | CH_bca_432 | 3 | 3 | 0.00000448617 |
| Brassica napus | C08 | 1 | CH_bna_441 | 3 | 5 | 0.0000400923 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 1 | CH_bvu_147 | 3 | 8 | 0.0000483121 |
| Camellia sinensis var. sinensis | Chr11 | 1 | CH_camsi_175 | 5 | 15 | 0.00000000153926 |
| Capsicum annuum | PGAv.1.6.scaffold574 | 1 | CH_can_74 | 5 | 9 | 0.000000000376453 |
| Corylus avellana | 6 | 1 | CH_cav_111 | 4 | 8 | 0.00000017199 |
| Corylus avellana | 4 | 1 | CH_cav_134 | 4 | 10 | 0.000000515549 |
| Citrus clementina | scaffold_8 | 1 | CH_ccl_92 | 4 | 4 | 0.00000000118418 |
| Carpinus fangiana | Cfa04 | 1 | CH_cfa_207 | 3 | 7 | 0.000049635 |
| Carya illinoinensis | Chr13 | 1 | CH_cil_25 | 9 | 12 | 2.1214e-22 |
| Citrullus lanatus | CG_Chr03 | 1 | CH_cla_95 | 3 | 5 | 0.0000259534 |
| Cucumis melo | chr02 | 1 | CH_cme_123 | 3 | 4 | 0.00000440499 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2465 | 1 | CH_cqu_251 | 3 | 3 | 0.00000383916 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 1 | CH_cqu_252 | 3 | 3 | 0.00000383916 |
| Cucumis sativus L. | chr1 | 1 | CH_csa_67 | 4 | 4 | 0.000000000863903 |
| Davidia involucrata | GWHABJS00000007 | 1 | CH_din_9 | 7 | 9 | 3.43821e-18 |
| Eucalyptus grandis | Chr10 | 1 | CH_egr_224 | 5 | 6 | 0.00000000000326691 |
| Erythranthe guttata | scaffold_14 | 1 | CH_egut_397 | 3 | 7 | 0.000269224 |
| Fragaria x ananassa | Fvb3-4 | 1 | CH_fan_164 | 4 | 7 | 0.000000302385 |
| Fragaria x ananassa | Fvb3-2 | 1 | CH_fan_303 | 3 | 3 | 0.000016696 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_157 | 4 | 10 | 0.000000305951 |
| Fragaria vesca | Fvb4 | 1 | CH_fve_250 | 3 | 5 | 0.0000353752 |
| Glycine max | Gm20 | 1 | CH_gma_282 | 3 | 3 | 0.0000117904 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_91 | 5 | 6 | 0.00000000000252804 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_284 | 3 | 4 | 0.0000107766 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_41 | 6 | 10 | 0.0000000000000102163 |
| Malus domestica | Chr03 | 1 | CH_mdo_362 | 3 | 4 | 0.0000224257 |
| Medicago truncatula | chr8 | 1 | CH_mtr_389 | 3 | 3 | 0.00000288669 |
| Olea europaea | chr12 | 1 | CH_oeu_42 | 4 | 5 | 0.00000000697934 |
| Prunus persica | Pp06 | 1 | CH_ppe_228 | 3 | 3 | 0.00000183639 |
| Papaver somniferum | NC_039368.1 | 1 | CH_pso_412 | 4 | 31 | 0.0000438125 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_549 | 3 | 8 | 0.000232192 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_151 | 4 | 5 | 0.0000000173299 |
| Quercus lobata | 1 | 1 | CH_qlo_25 | 10 | 12 | 7.88634e-28 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_51 | 8 | 24 | 7.51663e-18 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_352 | 3 | 8 | 0.000141696 |
| Salix brachista | GWHAAZH00000016 | 1 | CH_sbr_78 | 4 | 4 | 0.00000000229717 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_180 | 6 | 9 | 0.0000000000000200844 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_63 | 9 | 12 | 1.66117e-24 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_106 | 4 | 4 | 0.000000000551123 |
| Theobroma cacao | Chromosome_9 | 1 | CH_tca_123 | 4 | 6 | 0.0000000126336 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_263 | 3 | 5 | 0.0000832081 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_28 | 5 | 6 | 0.0000000000171763 |
| Acer truncatum | chr3 | 2 | CH_acertr_204 | 3 | 4 | 0.00000852597 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 2 | CH_amhyb_45 | 4 | 12 | 0.000000291662 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 2 | CH_arhy_374 | 3 | 3 | 0.00000879959 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 2 | CH_arhy_375 | 3 | 3 | 0.00000879959 |
| Brassica carinata | ChrC07 | 2 | CH_bca_130 | 4 | 4 | 0.00000000153441 |
| Brassica carinata | ChrB03 | 2 | CH_bca_432 | 3 | 3 | 0.00000448617 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 2 | CH_bvu_147 | 3 | 8 | 0.0000483121 |
| Camellia sinensis var. sinensis | Chr11 | 2 | CH_camsi_175 | 5 | 15 | 0.00000000153926 |
| Capsicum annuum | PGAv.1.6.scaffold574 | 2 | CH_can_74 | 5 | 9 | 0.000000000376453 |
| Corylus avellana | 6 | 2 | CH_cav_111 | 4 | 8 | 0.00000017199 |
| Corylus avellana | 4 | 2 | CH_cav_134 | 4 | 10 | 0.000000515549 |
| Citrus clementina | scaffold_8 | 2 | CH_ccl_92 | 4 | 4 | 0.00000000118418 |
| Carpinus fangiana | Cfa04 | 2 | CH_cfa_207 | 3 | 7 | 0.000049635 |
| Carya illinoinensis | Chr13 | 2 | CH_cil_25 | 9 | 12 | 2.1214e-22 |
| Citrullus lanatus | CG_Chr03 | 2 | CH_cla_95 | 3 | 5 | 0.0000259534 |
| Cucumis melo | chr02 | 2 | CH_cme_123 | 3 | 4 | 0.00000440499 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2465 | 2 | CH_cqu_251 | 3 | 3 | 0.00000383916 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 2 | CH_cqu_252 | 3 | 3 | 0.00000383916 |
| Cucumis sativus L. | chr1 | 2 | CH_csa_67 | 4 | 4 | 0.000000000863903 |
| Davidia involucrata | GWHABJS00000007 | 2 | CH_din_9 | 7 | 9 | 3.43821e-18 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_224 | 5 | 6 | 0.00000000000326691 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_640 | 3 | 5 | 0.0000349172 |
| Erythranthe guttata | scaffold_14 | 2 | CH_egut_397 | 3 | 7 | 0.000269224 |
| Fragaria x ananassa | Fvb3-4 | 2 | CH_fan_164 | 4 | 7 | 0.000000302385 |
| Fragaria x ananassa | Fvb3-2 | 2 | CH_fan_303 | 3 | 3 | 0.000016696 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_157 | 4 | 10 | 0.000000305951 |
| Fragaria vesca | Fvb4 | 2 | CH_fve_250 | 3 | 5 | 0.0000353752 |
| Glycine max | Gm20 | 2 | CH_gma_282 | 3 | 3 | 0.0000117904 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_91 | 5 | 6 | 0.00000000000252804 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_284 | 3 | 4 | 0.0000107766 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_41 | 6 | 10 | 0.0000000000000102163 |
| Malus domestica | Chr03 | 2 | CH_mdo_362 | 3 | 4 | 0.0000224257 |
| Olea europaea | chr12 | 2 | CH_oeu_42 | 4 | 5 | 0.00000000697934 |
| Prunus persica | Pp06 | 2 | CH_ppe_228 | 3 | 3 | 0.00000183639 |
| Papaver somniferum | NC_039368.1 | 2 | CH_pso_412 | 4 | 31 | 0.0000438125 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_549 | 3 | 8 | 0.000232192 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_151 | 4 | 5 | 0.0000000173299 |
| Quercus lobata | 1 | 2 | CH_qlo_25 | 10 | 12 | 7.88634e-28 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_51 | 8 | 24 | 7.51663e-18 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_352 | 3 | 8 | 0.000141696 |
| Salix brachista | GWHAAZH00000016 | 2 | CH_sbr_78 | 4 | 4 | 0.00000000229717 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_180 | 6 | 9 | 0.0000000000000200844 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_63 | 9 | 12 | 1.66117e-24 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_106 | 4 | 4 | 0.000000000551123 |
| Theobroma cacao | Chromosome_9 | 2 | CH_tca_123 | 4 | 6 | 0.0000000126336 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_263 | 3 | 5 | 0.0000832081 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_28 | 5 | 6 | 0.0000000000171763 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |