Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation:calcium cation exchanger (CCX)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-11 | 1 | CH_aar_269 | 2 | 2 | 0.000912326 |
Acer truncatum | chr1 | 1 | CH_acertr_28 | 6 | 21 | 0.00000000000097978 |
Aquilegia oxysepala | CHR01 | 1 | CH_aox_283 | 2 | 2 | 0.000481193 |
Arabidopsis thaliana | Chr5 | 1 | CH_ath_345 | 2 | 2 | 0.000286492 |
Brassica carinata | ChrC03 | 1 | CH_bca_456 | 3 | 6 | 0.00000767422 |
Brassica rapa | A10 | 1 | CH_bra_378 | 2 | 2 | 0.000901558 |
Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_56 | 7 | 47 | 0.0000000000000118097 |
Cicer arietinum L. | Ca_LG3_v3 | 1 | CH_car_309 | 2 | 2 | 0.000778301 |
Citrus clementina | scaffold_3 | 1 | CH_ccl_449 | 2 | 2 | 0.000492187 |
Carpinus fangiana | Cfa07 | 1 | CH_cfa_349 | 2 | 2 | 0.000454408 |
Cardamine hirsuta | Chr6 | 1 | CH_chi_419 | 2 | 2 | 0.000691204 |
Carya illinoinensis | Chr09 | 1 | CH_cil_484 | 2 | 2 | 0.000371897 |
Capsella rubella | scaffold_6 | 1 | CH_cru_414 | 2 | 2 | 0.000731154 |
Durio zibethinus | NW_019168004.1 | 1 | CH_dzi_355 | 2 | 2 | 0.000695233 |
Eutrema salsugineum | scaffold_2 | 1 | CH_esa_322 | 2 | 2 | 0.000761499 |
Magnolia biondii | Chr11 | 1 | CH_mbi_66 | 4 | 4 | 0.00000000000515518 |
Punica granatum | NC_045130.1 | 1 | CH_pgr_323 | 2 | 2 | 0.000450214 |
Physcomitrium patens | Chr03 | 1 | CH_ppa_237 | 2 | 2 | 0.000367636 |
Prunus persica | Pp07 | 1 | CH_ppe_457 | 2 | 2 | 0.000447577 |
Papaver somniferum | NC_039364.1 | 1 | CH_pso_629 | 2 | 2 | 0.000472989 |
Papaver somniferum | NC_039366.1 | 1 | CH_pso_630 | 2 | 2 | 0.000472989 |
Phaseolus vulgaris | Chr01 | 1 | CH_pvu_461 | 2 | 2 | 0.000734727 |
Salix brachista | GWHAAZH00000001 | 1 | CH_sbr_116 | 3 | 3 | 0.000000333554 |
Schrenkiella parvula | ch6-6 | 1 | CH_spa_290 | 2 | 2 | 0.00078734 |
Theobroma cacao | Chromosome_5 | 1 | CH_tca_435 | 2 | 2 | 0.000732386 |
Tarenaya hassleriana | NW_010966372.1 | 1 | CH_tha_211 | 2 | 2 | 0.00069847 |
Tripterygium wilfordii | NC_052246.1 | 1 | CH_twi_310 | 2 | 2 | 0.00083626 |
Vigna mungo | CM024070.1 | 1 | CH_vmu_421 | 2 | 2 | 0.000969211 |
Aethionema arabicum | LG-11 | 2 | CH_aar_269 | 2 | 2 | 0.000912326 |
Acer truncatum | chr1 | 2 | CH_acertr_28 | 6 | 21 | 0.00000000000097978 |
Aquilegia oxysepala | CHR01 | 2 | CH_aox_283 | 2 | 2 | 0.000481193 |
Arabidopsis thaliana | Chr5 | 2 | CH_ath_345 | 2 | 2 | 0.000286492 |
Brassica carinata | ChrC03 | 2 | CH_bca_456 | 3 | 6 | 0.00000767422 |
Brassica rapa | A10 | 2 | CH_bra_378 | 2 | 2 | 0.000901558 |
Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_56 | 7 | 47 | 0.0000000000000118097 |
Cicer arietinum L. | Ca_LG3_v3 | 2 | CH_car_309 | 2 | 2 | 0.000778301 |
Citrus clementina | scaffold_3 | 2 | CH_ccl_449 | 2 | 2 | 0.000492187 |
Carpinus fangiana | Cfa07 | 2 | CH_cfa_349 | 2 | 2 | 0.000454408 |
Cardamine hirsuta | Chr6 | 2 | CH_chi_419 | 2 | 2 | 0.000691204 |
Carya illinoinensis | Chr09 | 2 | CH_cil_484 | 2 | 2 | 0.000371897 |
Capsella rubella | scaffold_6 | 2 | CH_cru_414 | 2 | 2 | 0.000731154 |
Durio zibethinus | NW_019168004.1 | 2 | CH_dzi_355 | 2 | 2 | 0.000695233 |
Eucalyptus grandis | Chr01 | 2 | CH_egr_896 | 2 | 2 | 0.000585274 |
Eutrema salsugineum | scaffold_2 | 2 | CH_esa_322 | 2 | 2 | 0.000761499 |
Magnolia biondii | Chr11 | 2 | CH_mbi_66 | 4 | 4 | 0.00000000000515518 |
Punica granatum | NC_045130.1 | 2 | CH_pgr_323 | 2 | 2 | 0.000450214 |
Physcomitrium patens | Chr03 | 2 | CH_ppa_237 | 2 | 2 | 0.000367636 |
Prunus persica | Pp07 | 2 | CH_ppe_457 | 2 | 2 | 0.000447577 |
Papaver somniferum | NC_039364.1 | 2 | CH_pso_629 | 2 | 2 | 0.000472989 |
Papaver somniferum | NC_039366.1 | 2 | CH_pso_630 | 2 | 2 | 0.000472989 |
Phaseolus vulgaris | Chr01 | 2 | CH_pvu_461 | 2 | 2 | 0.000734727 |
Salix brachista | GWHAAZH00000001 | 2 | CH_sbr_116 | 3 | 3 | 0.000000333554 |
Schrenkiella parvula | ch6-6 | 2 | CH_spa_290 | 2 | 2 | 0.00078734 |
Theobroma cacao | Chromosome_5 | 2 | CH_tca_435 | 2 | 2 | 0.000732386 |
Tarenaya hassleriana | NW_010966372.1 | 2 | CH_tha_211 | 2 | 2 | 0.00069847 |
Tripterygium wilfordii | NC_052246.1 | 2 | CH_twi_310 | 2 | 2 | 0.00083626 |
Vigna mungo | CM024070.1 | 2 | CH_vmu_421 | 2 | 2 | 0.000969211 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |