Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation:calcium cation exchanger (CCX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-11 1 CH_aar_269 2 2 0.000912326
Acer truncatum chr1 1 CH_acertr_28 6 21 0.00000000000097978
Aquilegia oxysepala CHR01 1 CH_aox_283 2 2 0.000481193
Arabidopsis thaliana Chr5 1 CH_ath_345 2 2 0.000286492
Brassica carinata ChrC03 1 CH_bca_456 3 6 0.00000767422
Brassica rapa A10 1 CH_bra_378 2 2 0.000901558
Camellia sinensis var. sinensis Chr3 1 CH_camsi_56 7 47 0.0000000000000118097
Cicer arietinum L. Ca_LG3_v3 1 CH_car_309 2 2 0.000778301
Citrus clementina scaffold_3 1 CH_ccl_449 2 2 0.000492187
Carpinus fangiana Cfa07 1 CH_cfa_349 2 2 0.000454408
Cardamine hirsuta Chr6 1 CH_chi_419 2 2 0.000691204
Carya illinoinensis Chr09 1 CH_cil_484 2 2 0.000371897
Capsella rubella scaffold_6 1 CH_cru_414 2 2 0.000731154
Durio zibethinus NW_019168004.1 1 CH_dzi_355 2 2 0.000695233
Eutrema salsugineum scaffold_2 1 CH_esa_322 2 2 0.000761499
Magnolia biondii Chr11 1 CH_mbi_66 4 4 0.00000000000515518
Punica granatum NC_045130.1 1 CH_pgr_323 2 2 0.000450214
Physcomitrium patens Chr03 1 CH_ppa_237 2 2 0.000367636
Prunus persica Pp07 1 CH_ppe_457 2 2 0.000447577
Papaver somniferum NC_039364.1 1 CH_pso_629 2 2 0.000472989
Papaver somniferum NC_039366.1 1 CH_pso_630 2 2 0.000472989
Phaseolus vulgaris Chr01 1 CH_pvu_461 2 2 0.000734727
Salix brachista GWHAAZH00000001 1 CH_sbr_116 3 3 0.000000333554
Schrenkiella parvula ch6-6 1 CH_spa_290 2 2 0.00078734
Theobroma cacao Chromosome_5 1 CH_tca_435 2 2 0.000732386
Tarenaya hassleriana NW_010966372.1 1 CH_tha_211 2 2 0.00069847
Tripterygium wilfordii NC_052246.1 1 CH_twi_310 2 2 0.00083626
Vigna mungo CM024070.1 1 CH_vmu_421 2 2 0.000969211
Aethionema arabicum LG-11 2 CH_aar_269 2 2 0.000912326
Acer truncatum chr1 2 CH_acertr_28 6 21 0.00000000000097978
Aquilegia oxysepala CHR01 2 CH_aox_283 2 2 0.000481193
Arabidopsis thaliana Chr5 2 CH_ath_345 2 2 0.000286492
Brassica carinata ChrC03 2 CH_bca_456 3 6 0.00000767422
Brassica rapa A10 2 CH_bra_378 2 2 0.000901558
Camellia sinensis var. sinensis Chr3 2 CH_camsi_56 7 47 0.0000000000000118097
Cicer arietinum L. Ca_LG3_v3 2 CH_car_309 2 2 0.000778301
Citrus clementina scaffold_3 2 CH_ccl_449 2 2 0.000492187
Carpinus fangiana Cfa07 2 CH_cfa_349 2 2 0.000454408
Cardamine hirsuta Chr6 2 CH_chi_419 2 2 0.000691204
Carya illinoinensis Chr09 2 CH_cil_484 2 2 0.000371897
Capsella rubella scaffold_6 2 CH_cru_414 2 2 0.000731154
Durio zibethinus NW_019168004.1 2 CH_dzi_355 2 2 0.000695233
Eucalyptus grandis Chr01 2 CH_egr_896 2 2 0.000585274
Eutrema salsugineum scaffold_2 2 CH_esa_322 2 2 0.000761499
Magnolia biondii Chr11 2 CH_mbi_66 4 4 0.00000000000515518
Punica granatum NC_045130.1 2 CH_pgr_323 2 2 0.000450214
Physcomitrium patens Chr03 2 CH_ppa_237 2 2 0.000367636
Prunus persica Pp07 2 CH_ppe_457 2 2 0.000447577
Papaver somniferum NC_039364.1 2 CH_pso_629 2 2 0.000472989
Papaver somniferum NC_039366.1 2 CH_pso_630 2 2 0.000472989
Phaseolus vulgaris Chr01 2 CH_pvu_461 2 2 0.000734727
Salix brachista GWHAAZH00000001 2 CH_sbr_116 3 3 0.000000333554
Schrenkiella parvula ch6-6 2 CH_spa_290 2 2 0.00078734
Theobroma cacao Chromosome_5 2 CH_tca_435 2 2 0.000732386
Tarenaya hassleriana NW_010966372.1 2 CH_tha_211 2 2 0.00069847
Tripterygium wilfordii NC_052246.1 2 CH_twi_310 2 2 0.00083626
Vigna mungo CM024070.1 2 CH_vmu_421 2 2 0.000969211

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001