Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (ERD6)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 1 CH_aar_106 3 3 0.00000849023
Aethionema arabicum LG-11 1 CH_aar_36 5 7 0.0000000000674704
Arabidopsis lyrata scaffold_3 1 CH_aly_209 3 5 0.0000365705
Arabidopsis lyrata scaffold_1 1 CH_aly_80 4 5 0.00000000784825
Aquilegia oxysepala CHR02 1 CH_aox_191 3 15 0.0000876612
Arabidopsis thaliana Chr1 1 CH_ath_120 4 10 0.0000000573581
Arabidopsis thaliana Chr3 1 CH_ath_80 4 6 0.00000000410006
Amborella trichopoda AmTr_v1.0_scaffold00019 1 CH_atr_122 3 6 0.00000189276
Brassica carinata ChrC07 1 CH_bca_493 3 3 0.0000134345
Brassica carinata ChrC05 1 CH_bca_584 3 4 0.0000537173
Brassica napus A06 1 CH_bna_522 3 5 0.000159167
Brassica oleracea C5 1 CH_bol_221 3 4 0.0000234158
Brassica rapa A06 1 CH_bra_192 3 4 0.0000403912
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_125 3 6 0.00000719392
Camellia sinensis var. sinensis Chr6 1 CH_camsi_387 3 3 0.00000257371
Camellia sinensis var. sinensis Chr9 1 CH_camsi_391 4 18 0.00000269802
Camellia sinensis var. sinensis Chr11 1 CH_camsi_449 3 4 0.000010292
Camellia sinensis var. sinensis Contig641 1 CH_camsi_493 3 5 0.0000257226
Capsicum annuum PGAv.1.6.scaffold134 1 CH_can_402 2 2 0.000495663
Cicer arietinum L. Ca_LG7_v3 1 CH_car_72 4 16 0.000000846956
Coffea canephora chr2 1 CH_ccan_14 6 74 0.0000000000000763605
Citrus clementina scaffold_3 1 CH_ccl_219 3 4 0.00000666017
Citrus clementina scaffold_5 1 CH_ccl_85 5 15 0.000000000470122
Cardamine hirsuta Chr1 1 CH_chi_208 3 5 0.0000584308
Cardamine hirsuta Chr3 1 CH_chi_82 4 4 0.00000000303185
Carya illinoinensis Chr07 1 CH_cil_313 3 7 0.0000169316
Chenopodium quinoa C_Quinoa_Scaffold_3820 1 CH_cqu_131 4 7 0.0000000265637
Chenopodium quinoa C_Quinoa_Scaffold_2088 1 CH_cqu_294 3 5 0.0000228877
Chenopodium quinoa C_Quinoa_Scaffold_3901 1 CH_cqu_510 3 12 0.000502571
Capsella rubella scaffold_3 1 CH_cru_204 3 3 0.00000545299
Capsella rubella scaffold_6 1 CH_cru_224 3 4 0.0000218028
Daucus carota DCARv2_Chr1 1 CH_dca_468 2 2 0.000956663
Davidia involucrata GWHABJS00000002 1 CH_din_275 3 9 0.0000692558
Davidia involucrata GWHABJS00000005 1 CH_din_43 5 11 0.0000000000171539
Durio zibethinus NW_019168481.1 1 CH_dzi_166 3 4 0.00000721638
Durio zibethinus NW_019168004.1 1 CH_dzi_69 4 6 0.00000000815113
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_153 3 3 0.000000253709
Eucalyptus grandis Chr02 1 CH_egr_15 13 14 5.08295e-35
Eutrema salsugineum scaffold_5 1 CH_esa_137 3 4 0.0000194767
Fragaria x ananassa Fvb6-3 1 CH_fan_204 3 3 0.00000150222
Fragaria x ananassa Fvb6-1 1 CH_fan_205 3 3 0.00000150222
Fragaria x ananassa Fvb2-2 1 CH_fan_327 3 6 0.0000300286
Fragaria vesca Fvb2 1 CH_fve_242 3 5 0.0000236723
Fragaria vesca Fvb6 1 CH_fve_6 10 14 1.82126e-28
Gossypium hirsutum D11 1 CH_ghi_34 7 8 7.6844e-19
Gossypium hirsutum A11 1 CH_ghi_74 6 10 0.0000000000000580527
Gossypium raimondii Chr07 1 CH_gra_14 7 10 4.36163e-18
Hydrangea macrophylla Hma1.2p1_0617F.1 1 CH_hma_388 2 2 0.000666519
Lotus japonicus chr1 1 CH_lja_57 4 4 0.0000000000767936
Malus domestica Chr11 1 CH_mdo_103 4 4 0.0000000000809834
Malus domestica Chr12 1 CH_mdo_189 4 12 0.0000000400418
Manihot esculenta Chromosome08 1 CH_mes_117 4 4 0.00000000093246
Manihot esculenta Chromosome09 1 CH_mes_60 5 5 0.000000000000313193
Nelumbo nucifera chr3 1 CH_nnu_92 3 3 0.0000000570339
Oryza sativa ssp. japonica chr03 1 CH_osa_364 2 2 0.000528123
Punica granatum NC_045133.1 1 CH_pgr_32 5 6 0.00000000000065906
Prunus persica Pp08 1 CH_ppe_197 3 3 0.000000292152
Pisum sativum chr3LG5 1 CH_psa_354 3 24 0.000461428
Papaver somniferum NC_039360.1 1 CH_pso_325 4 46 0.00000275928
Papaver somniferum NW_020624820.1 1 CH_pso_714 3 33 0.000911002
Populus trichocarpa Chr13 1 CH_ptr_244 3 4 0.00000330687
Phaseolus vulgaris Chr06 1 CH_pvu_211 3 5 0.0000045331
Quercus lobata 3 1 CH_qlo_15 14 47 2.14178e-32
Quercus lobata 6 1 CH_qlo_609 3 4 0.0000246206
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_229 4 8 0.0000000181477
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_32 8 14 9.73605e-22
Salvia bowleyana GWHASIU00000003 1 CH_sbo_485 2 2 0.000955457
Salix brachista GWHAAZH00000005 1 CH_sbr_131 3 3 0.000000714759
Salix brachista GWHAAZH00000013 1 CH_sbr_159 3 4 0.00000285847
Simmondsia chinensis GWHAASQ00000009 1 CH_sci_97 3 4 0.00000243536
Solanum lycopersicum SL4.0ch01 1 CH_sly_279 3 8 0.0000346947
Schrenkiella parvula ch3-1 1 CH_spa_61 4 4 0.00000000348526
Solanum pennellii Spenn-ch01 1 CH_spe_244 3 8 0.0000199287
Solanum tuberosum ST4.03ch01 1 CH_stu_290 3 5 0.00000649737
Selenicereus undatus Scaffold_33680 1 CH_sun_237 2 2 0.000435983
Trochodendron aralioides group17 1 CH_tar_172 3 4 0.00000121094
Theobroma cacao Chromosome_5 1 CH_tca_25 6 8 6.13301e-16
Tarenaya hassleriana NW_010960187.1 1 CH_tha_121 3 5 0.000147946
Tarenaya hassleriana NW_010961290.1 1 CH_tha_16 5 5 0.00000000000758882
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_126 3 3 0.000000722019
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_146 3 4 0.00000181306
Vigna mungo CM024075.1 1 CH_vmu_145 3 7 0.0000122673
Vitis vinifera chr5 1 CH_vvi_396 3 9 0.000494428
Vitis vinifera chr14 1 CH_vvi_6 11 14 1.13944e-30
Zea mays 6 1 CH_zma_104 3 4 0.00000258787
Zea mays 8 1 CH_zma_90 3 3 0.000000647082
Aethionema arabicum LG-5 2 CH_aar_106 3 3 0.00000849023
Aethionema arabicum LG-11 2 CH_aar_36 5 7 0.0000000000674704
Arabidopsis lyrata scaffold_3 2 CH_aly_209 3 5 0.0000365705
Arabidopsis lyrata scaffold_1 2 CH_aly_80 4 5 0.00000000784825
Aquilegia oxysepala CHR02 2 CH_aox_191 3 15 0.0000876612
Arabidopsis thaliana Chr1 2 CH_ath_120 4 10 0.0000000573581
Arabidopsis thaliana Chr3 2 CH_ath_80 4 6 0.00000000410006
Amborella trichopoda AmTr_v1.0_scaffold00019 2 CH_atr_122 3 6 0.00000189276
Brassica carinata ChrC07 2 CH_bca_493 3 3 0.0000134345
Brassica carinata ChrC05 2 CH_bca_584 3 4 0.0000537173
Brassica oleracea C5 2 CH_bol_221 3 4 0.0000234158
Brassica rapa A06 2 CH_bra_192 3 4 0.0000403912
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_125 3 6 0.00000719392
Camellia sinensis var. sinensis Chr6 2 CH_camsi_387 3 3 0.00000257371
Camellia sinensis var. sinensis Chr9 2 CH_camsi_391 4 18 0.00000269802
Camellia sinensis var. sinensis Chr11 2 CH_camsi_449 3 4 0.000010292
Camellia sinensis var. sinensis Contig641 2 CH_camsi_493 3 5 0.0000257226
Capsicum annuum PGAv.1.6.scaffold134 2 CH_can_402 2 2 0.000495663
Cicer arietinum L. Ca_LG7_v3 2 CH_car_72 4 16 0.000000846956
Coffea canephora chr2 2 CH_ccan_14 6 74 0.0000000000000763605
Citrus clementina scaffold_3 2 CH_ccl_219 3 4 0.00000666017
Citrus clementina scaffold_5 2 CH_ccl_85 5 15 0.000000000470122
Cardamine hirsuta Chr1 2 CH_chi_208 3 5 0.0000584308
Cardamine hirsuta Chr3 2 CH_chi_82 4 4 0.00000000303185
Carya illinoinensis Chr07 2 CH_cil_313 3 7 0.0000169316
Chenopodium quinoa C_Quinoa_Scaffold_3820 2 CH_cqu_131 4 7 0.0000000265637
Chenopodium quinoa C_Quinoa_Scaffold_2088 2 CH_cqu_294 3 5 0.0000228877
Chenopodium quinoa C_Quinoa_Scaffold_3901 2 CH_cqu_510 3 12 0.000502571
Capsella rubella scaffold_3 2 CH_cru_204 3 3 0.00000545299
Capsella rubella scaffold_6 2 CH_cru_224 3 4 0.0000218028
Daucus carota DCARv2_Chr1 2 CH_dca_468 2 2 0.000956663
Davidia involucrata GWHABJS00000002 2 CH_din_275 3 9 0.0000692558
Davidia involucrata GWHABJS00000005 2 CH_din_43 5 11 0.0000000000171539
Durio zibethinus NW_019168481.1 2 CH_dzi_166 3 4 0.00000721638
Durio zibethinus NW_019168004.1 2 CH_dzi_69 4 6 0.00000000815113
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_153 3 3 0.000000253709
Eucalyptus grandis Chr02 2 CH_egr_15 13 14 5.08295e-35
Eucalyptus grandis Chr04 2 CH_egr_402 4 4 0.0000000314947
Eucalyptus grandis Chr08 2 CH_egr_403 4 4 0.0000000314947
Eucalyptus grandis Chr09 2 CH_egr_404 4 4 0.0000000314947
Eucalyptus grandis Chr08 2 CH_egr_446 6 40 0.0000000938503
Eutrema salsugineum scaffold_5 2 CH_esa_137 3 4 0.0000194767
Fragaria x ananassa Fvb6-3 2 CH_fan_204 3 3 0.00000150222
Fragaria x ananassa Fvb6-1 2 CH_fan_205 3 3 0.00000150222
Fragaria x ananassa Fvb2-2 2 CH_fan_327 3 6 0.0000300286
Fragaria vesca Fvb2 2 CH_fve_242 3 5 0.0000236723
Fragaria vesca Fvb6 2 CH_fve_6 10 14 1.82126e-28
Gossypium hirsutum D11 2 CH_ghi_34 7 8 7.6844e-19
Gossypium hirsutum A11 2 CH_ghi_74 6 10 0.0000000000000580527
Gossypium raimondii Chr07 2 CH_gra_14 7 10 4.36163e-18
Hydrangea macrophylla Hma1.2p1_0617F.1 2 CH_hma_388 2 2 0.000666519
Lotus japonicus chr1 2 CH_lja_57 4 4 0.0000000000767936
Malus domestica Chr11 2 CH_mdo_103 4 4 0.0000000000809834
Malus domestica Chr12 2 CH_mdo_189 4 12 0.0000000400418
Manihot esculenta Chromosome08 2 CH_mes_117 4 4 0.00000000093246
Manihot esculenta Chromosome09 2 CH_mes_60 5 5 0.000000000000313193
Nelumbo nucifera chr3 2 CH_nnu_92 3 3 0.0000000570339
Oryza sativa ssp. japonica chr03 2 CH_osa_364 2 2 0.000528123
Punica granatum NC_045133.1 2 CH_pgr_32 5 6 0.00000000000065906
Prunus persica Pp08 2 CH_ppe_197 3 3 0.000000292152
Pisum sativum chr3LG5 2 CH_psa_354 3 24 0.000461428
Papaver somniferum NC_039360.1 2 CH_pso_325 4 46 0.00000275928
Papaver somniferum NW_020624820.1 2 CH_pso_714 3 33 0.000911002
Populus trichocarpa Chr13 2 CH_ptr_244 3 4 0.00000330687
Phaseolus vulgaris Chr06 2 CH_pvu_211 3 5 0.0000045331
Quercus lobata 3 2 CH_qlo_15 14 47 2.14178e-32
Quercus lobata 6 2 CH_qlo_609 3 4 0.0000246206
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_229 4 8 0.0000000181477
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_32 8 14 9.73605e-22
Salvia bowleyana GWHASIU00000003 2 CH_sbo_485 2 2 0.000955457
Salix brachista GWHAAZH00000005 2 CH_sbr_131 3 3 0.000000714759
Salix brachista GWHAAZH00000013 2 CH_sbr_159 3 4 0.00000285847
Simmondsia chinensis GWHAASQ00000009 2 CH_sci_97 3 4 0.00000243536
Solanum lycopersicum SL4.0ch01 2 CH_sly_279 3 8 0.0000346947
Schrenkiella parvula ch3-1 2 CH_spa_61 4 4 0.00000000348526
Solanum pennellii Spenn-ch01 2 CH_spe_244 3 8 0.0000199287
Solanum tuberosum ST4.03ch01 2 CH_stu_290 3 5 0.00000649737
Selenicereus undatus Scaffold_33680 2 CH_sun_237 2 2 0.000435983
Trochodendron aralioides group17 2 CH_tar_172 3 4 0.00000121094
Theobroma cacao Chromosome_5 2 CH_tca_25 6 8 6.13301e-16
Tarenaya hassleriana NW_010960187.1 2 CH_tha_121 3 5 0.000147946
Tarenaya hassleriana NW_010961290.1 2 CH_tha_16 5 5 0.00000000000758882
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_126 3 3 0.000000722019
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_146 3 4 0.00000181306
Vigna mungo CM024075.1 2 CH_vmu_145 3 7 0.0000122673
Vitis vinifera chr5 2 CH_vvi_396 3 9 0.000494428
Vitis vinifera chr14 2 CH_vvi_6 11 14 1.13944e-30
Zea mays 6 2 CH_zma_104 3 4 0.00000258787
Zea mays 8 2 CH_zma_90 3 3 0.000000647082

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001