Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.OPT family.oligopeptide transporter (OPT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_23 6 10 0.000000000000101707
Actinidia chinensis Lachesis_group14 1 CH_ach_47 3 3 0.00000097379
Avicennia marina ScioBoG_102840_HRSCAF_103099 1 CH_ama_73 3 13 0.000178241
Aquilegia oxysepala CHR06 1 CH_aox_98 3 3 0.0000021226
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_320 3 3 0.00000272122
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_471 3 7 0.0000951471
Amborella trichopoda AmTr_v1.0_scaffold00041 1 CH_atr_69 4 10 0.0000000110468
Camellia sinensis var. sinensis Chr13 1 CH_camsi_512 4 36 0.000040216
Capsicum annuum PGAv.1.6.scaffold723 1 CH_can_103 4 6 0.000000012552
Corylus avellana 9 1 CH_cav_8 9 15 9.68434e-23
Coffea canephora chr2 1 CH_ccan_389 2 4 0.000996567
Coffea canephora chr0 1 CH_ccan_72 4 56 0.0000000381301
Coffea canephora chr9 1 CH_ccan_81 3 6 0.000000155618
Citrus clementina scaffold_1 1 CH_ccl_91 4 4 0.00000000118418
Carya illinoinensis Chr05 1 CH_cil_298 3 4 0.0000083885
Corchorus olitorius AWUE01022528.1 1 CH_col_22 4 6 0.0000000392309
Carica papaya supercontig_52 1 CH_cpa_103 3 3 0.00000298254
Cucumis sativus L. chr3 1 CH_csa_140 3 3 0.00000172471
Eucalyptus grandis Chr04 1 CH_egr_250 6 19 0.0000000000226366
Fragaria vesca Fvb3 1 CH_fve_301 3 11 0.000102922
Gossypium hirsutum A05 1 CH_ghi_310 3 3 0.000000872691
Gossypium hirsutum D05 1 CH_ghi_311 3 3 0.000000872691
Hydrangea macrophylla Hma1.2p1_0125F.1 1 CH_hma_28 4 5 0.00000000431681
Lupinus albus Lalb_Chr02 1 CH_lal_20 6 9 0.0000000000000060234
Lonicera japonica GWHAAZE00000002 1 CH_lonja_116 5 9 0.000000000246973
Lonicera japonica GWHAAZE00000005 1 CH_lonja_327 3 4 0.0000286087
Lonicera japonica GWHAAZE00000004 1 CH_lonja_426 3 6 0.000142919
Magnolia biondii Chr15 1 CH_mbi_209 4 9 0.000000884466
Magnolia biondii Chr15 1 CH_mbi_4 14 61 7.92401e-29
Magnolia biondii Chr16 1 CH_mbi_683 3 9 0.000970825
Malus domestica Chr03 1 CH_mdo_264 3 3 0.00000120796
Medicago truncatula chr7 1 CH_mtr_341 3 3 0.00000055708
Medicago truncatula chr5 1 CH_mtr_454 3 6 0.0000111363
Nelumbo nucifera chr3 1 CH_nnu_133 3 4 0.00000188183
Oryza sativa ssp. japonica chr06 1 CH_osa_355 3 20 0.00048521
Punica granatum NC_045128.1 1 CH_pgr_167 3 4 0.00000743018
Prunus persica Pp06 1 CH_ppe_215 3 3 0.00000100167
Pisum sativum chr3LG5 1 CH_psa_60 4 5 0.00000000213087
Papaver somniferum NC_039363.1 1 CH_pso_145 4 5 0.00000000125355
Papaver somniferum NW_020621047.1 1 CH_pso_162 4 6 0.00000000375998
Phaseolus vulgaris Chr03 1 CH_pvu_194 3 3 0.00000231593
Quercus lobata 8 1 CH_qlo_160 7 23 0.000000000000238864
Quercus lobata 11 1 CH_qlo_487 4 9 0.000000775893
Quercus lobata 6 1 CH_qlo_505 4 10 0.00000129253
Quercus lobata 5 1 CH_qlo_630 3 4 0.0000415639
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_240 5 39 0.000000032549
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_620 3 10 0.00012998
Salvia bowleyana GWHASIU00000004 1 CH_sbo_427 3 39 0.000566054
Salix brachista GWHAAZH00000009 1 CH_sbr_179 3 4 0.00000866988
Salix brachista GWHAAZH00000016 1 CH_sbr_242 3 7 0.0000757952
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_349 4 4 0.00000000106137
Sequoiadendron giganteum chr3 1 CH_sgi_570 4 12 0.00000052413
Sequoiadendron giganteum chr3 1 CH_sgi_675 3 4 0.0000116158
Solanum lycopersicum SL4.0ch04 1 CH_sly_227 3 4 0.00000340994
Solanum pennellii Spenn-ch04 1 CH_spe_113 4 8 0.00000000914184
Trochodendron aralioides group14 1 CH_tar_204 3 4 0.00000983734
Trochodendron aralioides group0 1 CH_tar_234 3 6 0.0000491572
Utricularia gibba unitig_37 1 CH_ugi_68 4 11 0.00000019391
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_148 3 3 0.00000213722
Vanilla planifolia CM028160.1 1 CH_vpl_102 3 3 0.00000793558
Vitis vinifera chr18 1 CH_vvi_221 3 3 0.00000486007
Vitis vinifera chr19 1 CH_vvi_67 5 6 0.00000000000657839
Acer truncatum chr3 2 CH_acertr_23 6 10 0.000000000000101707
Actinidia chinensis Lachesis_group14 2 CH_ach_47 3 3 0.00000097379
Avicennia marina ScioBoG_102840_HRSCAF_103099 2 CH_ama_73 3 13 0.000178241
Aquilegia oxysepala CHR06 2 CH_aox_98 3 3 0.0000021226
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_320 3 3 0.00000272122
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_471 3 7 0.0000951471
Amborella trichopoda AmTr_v1.0_scaffold00041 2 CH_atr_69 4 10 0.0000000110468
Camellia sinensis var. sinensis Chr13 2 CH_camsi_512 4 36 0.000040216
Capsicum annuum PGAv.1.6.scaffold723 2 CH_can_103 4 6 0.000000012552
Corylus avellana 9 2 CH_cav_8 9 15 9.68434e-23
Coffea canephora chr2 2 CH_ccan_389 2 4 0.000996567
Coffea canephora chr0 2 CH_ccan_72 4 56 0.0000000381301
Coffea canephora chr9 2 CH_ccan_81 3 6 0.000000155618
Citrus clementina scaffold_1 2 CH_ccl_91 4 4 0.00000000118418
Carya illinoinensis Chr05 2 CH_cil_298 3 4 0.0000083885
Corchorus olitorius AWUE01022528.1 2 CH_col_22 4 6 0.0000000392309
Carica papaya supercontig_52 2 CH_cpa_103 3 3 0.00000298254
Cucumis sativus L. chr3 2 CH_csa_140 3 3 0.00000172471
Eucalyptus grandis Chr04 2 CH_egr_250 6 19 0.0000000000226366
Eucalyptus grandis Chr09 2 CH_egr_333 4 4 0.0000000036
Eucalyptus grandis Chr10 2 CH_egr_581 3 3 0.000006834
Fragaria vesca Fvb3 2 CH_fve_301 3 11 0.000102922
Gossypium hirsutum A05 2 CH_ghi_310 3 3 0.000000872691
Gossypium hirsutum D05 2 CH_ghi_311 3 3 0.000000872691
Hydrangea macrophylla Hma1.2p1_0125F.1 2 CH_hma_28 4 5 0.00000000431681
Lupinus albus Lalb_Chr02 2 CH_lal_20 6 9 0.0000000000000060234
Lonicera japonica GWHAAZE00000002 2 CH_lonja_116 5 9 0.000000000246973
Lonicera japonica GWHAAZE00000005 2 CH_lonja_327 3 4 0.0000286087
Lonicera japonica GWHAAZE00000004 2 CH_lonja_426 3 6 0.000142919
Magnolia biondii Chr15 2 CH_mbi_209 4 9 0.000000884466
Magnolia biondii Chr15 2 CH_mbi_4 14 61 7.92401e-29
Magnolia biondii Chr16 2 CH_mbi_683 3 9 0.000970825
Malus domestica Chr03 2 CH_mdo_264 3 3 0.00000120796
Nelumbo nucifera chr3 2 CH_nnu_133 3 4 0.00000188183
Oryza sativa ssp. japonica chr06 2 CH_osa_355 3 20 0.00048521
Punica granatum NC_045128.1 2 CH_pgr_167 3 4 0.00000743018
Prunus persica Pp06 2 CH_ppe_215 3 3 0.00000100167
Pisum sativum chr3LG5 2 CH_psa_60 4 5 0.00000000213087
Papaver somniferum NC_039363.1 2 CH_pso_145 4 5 0.00000000125355
Papaver somniferum NW_020621047.1 2 CH_pso_162 4 6 0.00000000375998
Phaseolus vulgaris Chr03 2 CH_pvu_194 3 3 0.00000231593
Quercus lobata 8 2 CH_qlo_160 7 23 0.000000000000238864
Quercus lobata 11 2 CH_qlo_487 4 9 0.000000775893
Quercus lobata 6 2 CH_qlo_505 4 10 0.00000129253
Quercus lobata 5 2 CH_qlo_630 3 4 0.0000415639
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_240 5 39 0.000000032549
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_620 3 10 0.00012998
Salvia bowleyana GWHASIU00000004 2 CH_sbo_427 3 39 0.000566054
Salix brachista GWHAAZH00000009 2 CH_sbr_179 3 4 0.00000866988
Salix brachista GWHAAZH00000016 2 CH_sbr_242 3 7 0.0000757952
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_349 4 4 0.00000000106137
Sequoiadendron giganteum chr3 2 CH_sgi_570 4 12 0.00000052413
Sequoiadendron giganteum chr3 2 CH_sgi_675 3 4 0.0000116158
Solanum lycopersicum SL4.0ch04 2 CH_sly_227 3 4 0.00000340994
Solanum pennellii Spenn-ch04 2 CH_spe_113 4 8 0.00000000914184
Trochodendron aralioides group14 2 CH_tar_204 3 4 0.00000983734
Trochodendron aralioides group0 2 CH_tar_234 3 6 0.0000491572
Utricularia gibba unitig_37 2 CH_ugi_68 4 11 0.00000019391
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_148 3 3 0.00000213722
Vanilla planifolia CM028160.1 2 CH_vpl_102 3 3 0.00000793558
Vitis vinifera chr18 2 CH_vvi_221 3 3 0.00000486007
Vitis vinifera chr19 2 CH_vvi_67 5 6 0.00000000000657839

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001