Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:monovalent cation antiporter (CHX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 1 CH_aag_119 3 31 0.000173384
Acer truncatum chr3 1 CH_acertr_208 3 3 0.00000991516
Acer truncatum chr8 1 CH_acertr_79 4 4 0.00000000629134
Arabidopsis lyrata scaffold_5 1 CH_aly_198 3 3 0.0000169912
Arabidopsis lyrata scaffold_1 1 CH_aly_256 3 4 0.000067924
Aquilegia oxysepala CHR01 1 CH_aox_111 3 3 0.00000934909
Aquilegia oxysepala CHR01 1 CH_aox_127 3 4 0.0000373769
Arabidopsis thaliana Chr3 1 CH_ath_131 4 8 0.000000100994
Arabidopsis thaliana Chr1 1 CH_ath_183 3 3 0.00000403335
Amborella trichopoda AmTr_v1.0_scaffold00068 1 CH_atr_56 5 12 0.00000000202075
Brassica carinata ChrC07 1 CH_bca_582 3 3 0.0000501396
Camellia sinensis var. sinensis Chr14 1 CH_camsi_180 4 4 0.00000000211601
Cannabis sativa NC_044375.1 1 CH_cansat_162 4 13 0.00000361948
Cannabis sativa NC_044378.1 1 CH_cansat_194 3 4 0.0000343928
Corylus avellana 1 1 CH_cav_107 4 6 0.000000121257
Corylus avellana 6 1 CH_cav_212 4 21 0.000047977
Corylus avellana 6 1 CH_cav_384 3 7 0.00040955
Coffea canephora chr2 1 CH_ccan_109 3 11 0.00000204225
Coffea canephora chr1 1 CH_ccan_248 3 46 0.000131858
Citrus clementina scaffold_6 1 CH_ccl_357 3 4 0.000147411
Citrus clementina scaffold_4 1 CH_ccl_46 7 15 0.000000000000239547
Ceratophyllum demersum 5 1 CH_cde_14 5 10 0.000000000628765
Carpinus fangiana Cfa04 1 CH_cfa_330 3 12 0.000311578
Cardamine hirsuta Chr4 1 CH_chi_329 3 5 0.000234461
Cardamine hirsuta Chr5 1 CH_chi_386 3 6 0.000468601
Cardamine hirsuta Chr1 1 CH_chi_99 4 4 0.0000000202866
Carya illinoinensis Chr13 1 CH_cil_165 5 11 0.00000000411474
Carya illinoinensis Chr14 1 CH_cil_211 4 5 0.0000000626559
Citrullus lanatus CG_Chr07 1 CH_cla_88 4 16 0.0000146746
Cucumis melo chr07 1 CH_cme_128 3 3 0.0000076104
Chenopodium quinoa C_Quinoa_Scaffold_2716 1 CH_cqu_138 4 4 0.0000000520806
Chenopodium quinoa C_Quinoa_Scaffold_1480 1 CH_cqu_312 3 3 0.0000511214
Chenopodium quinoa C_Quinoa_Scaffold_2493 1 CH_cqu_328 5 48 0.0000856162
Chenopodium quinoa C_Quinoa_Scaffold_1280 1 CH_cqu_396 3 4 0.000204324
Capsella rubella scaffold_5 1 CH_cru_216 3 3 0.0000162307
Capsella rubella scaffold_1 1 CH_cru_217 3 3 0.0000162307
Cucumis sativus L. chr3 1 CH_csa_289 3 7 0.000416109
Cucumis sativus L. chr4 1 CH_csa_78 4 4 0.00000000845577
Davidia involucrata GWHABJS00000009 1 CH_din_195 3 3 0.00000664474
Durio zibethinus NW_019167893.1 1 CH_dzi_247 4 30 0.00016559
Erythranthe guttata scaffold_14 1 CH_egut_399 3 8 0.000302226
Eutrema salsugineum scaffold_4 1 CH_esa_140 3 3 0.0000226162
Fragaria vesca Fvb7 1 CH_fve_76 6 25 0.000000000377153
Gossypium hirsutum A08 1 CH_ghi_114 5 5 0.0000000000267995
Gossypium hirsutum D08 1 CH_ghi_134 5 6 0.000000000160691
Gossypium hirsutum A02 1 CH_ghi_441 3 3 0.0000424699
Gossypium hirsutum D12 1 CH_ghi_442 3 3 0.0000424699
Glycine max Gm14 1 CH_gma_312 3 3 0.0000266688
Glycine max Gm18 1 CH_gma_635 3 7 0.000931214
Gossypium raimondii Chr08 1 CH_gra_221 3 3 0.0000235223
Gossypium raimondii Chr03 1 CH_gra_331 3 5 0.000234927
Gossypium raimondii Chr04 1 CH_gra_66 5 5 0.0000000000147062
Hydrangea macrophylla Hma1.2p1_0292F.1 1 CH_hma_64 3 3 0.000000370226
Lupinus albus Lalb_Chr18 1 CH_lal_105 4 6 0.000000801501
Lupinus albus Lalb_Chr08 1 CH_lal_285 3 4 0.000203792
Lupinus albus Lalb_Chr15 1 CH_lal_342 3 5 0.000509066
Lotus japonicus chr6 1 CH_lja_117 5 13 0.0000000813401
Magnolia biondii Chr15 1 CH_mbi_96 6 62 0.00000000184885
Malus domestica Chr02 1 CH_mdo_294 4 10 0.00000312922
Malus domestica Chr07 1 CH_mdo_339 4 13 0.0000106362
Malus domestica Chr04 1 CH_mdo_412 3 4 0.0000852006
Manihot esculenta Chromosome18 1 CH_mes_329 3 5 0.000128507
Marchantia polymorpha scaffold_11 1 CH_mpo_130 2 3 0.000993889
Medicago truncatula chr5 1 CH_mtr_370 4 7 0.00000141396
Medicago truncatula chr5 1 CH_mtr_432 5 33 0.00000850439
Medicago truncatula chr7 1 CH_mtr_459 4 11 0.000013292
Medicago truncatula chr5 1 CH_mtr_647 3 4 0.000175061
Nelumbo nucifera chr2 1 CH_nnu_98 5 25 0.0000000922802
Punica granatum NC_045134.1 1 CH_pgr_169 3 3 0.00000818402
Punica granatum NC_045128.1 1 CH_pgr_251 3 6 0.000163441
Prunus persica Pp02 1 CH_ppe_164 5 12 0.000000026068
Prunus persica Pp04 1 CH_ppe_361 4 17 0.0000803775
Prunus persica Pp06 1 CH_ppe_92 5 5 0.0000000000331024
Pisum sativum chr5LG3 1 CH_psa_181 3 3 0.0000149143
Papaver somniferum NC_039358.1 1 CH_pso_336 5 30 0.00000378761
Papaver somniferum NW_020620492.1 1 CH_pso_49 8 21 0.00000000000000223746
Papaver somniferum NW_020620714.1 1 CH_pso_508 3 4 0.000181426
Papaver somniferum NC_039362.1 1 CH_pso_54 9 52 0.00000000000000481093
Papaver somniferum NC_039366.1 1 CH_pso_86 7 19 0.000000000000757318
Phaseolus vulgaris Chr06 1 CH_pvu_92 5 9 0.00000000269904
Quercus lobata 1 1 CH_qlo_172 6 8 0.000000000000536637
Quercus lobata 3 1 CH_qlo_617 3 3 0.0000310677
Quercus lobata 7 1 CH_qlo_618 3 3 0.0000310677
Quercus lobata 1 1 CH_qlo_736 3 4 0.000124186
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_374 4 16 0.00000252125
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_426 3 4 0.0000146804
Rhododendron simsii chr13 1 CH_rsi_372 3 5 0.0000711471
Simmondsia chinensis GWHAASQ00000025 1 CH_sci_128 3 4 0.0000669426
Sechium edule LG06 1 CH_sed_150 3 3 0.0000117576
Sequoiadendron giganteum chr7 1 CH_sgi_591 4 29 0.00000103484
Schrenkiella parvula ch6-6 1 CH_spa_146 3 3 0.0000241772
Schrenkiella parvula ch1-1 1 CH_spa_147 3 3 0.0000241772
Trochodendron aralioides group7 1 CH_tar_229 3 5 0.0000367406
Theobroma cacao Chromosome_10 1 CH_tca_203 4 9 0.000000886467
Tarenaya hassleriana NW_010969548.1 1 CH_tha_94 3 3 0.0000239743
Tarenaya hassleriana NW_010967707.1 1 CH_tha_95 3 3 0.0000239743
Trifolium pratense Tp57577_TGAC_v2_scaf_169 1 CH_tpr_147 4 9 0.00000244284
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_179 3 3 0.0000125513
Vigna mungo CM024075.1 1 CH_vmu_434 3 7 0.000982477
Vanilla planifolia CM028155.1 1 CH_vpl_97 3 3 0.00000668259
Vanilla planifolia JADCNL010000016.1 1 CH_vpl_98 3 3 0.00000668259
Vitis vinifera chr6 1 CH_vvi_163 4 9 0.000000302174
Anthoceros agrestis Sc2ySwM_368 2 CH_aag_119 3 31 0.000173384
Acer truncatum chr3 2 CH_acertr_208 3 3 0.00000991516
Acer truncatum chr8 2 CH_acertr_79 4 4 0.00000000629134
Arabidopsis lyrata scaffold_5 2 CH_aly_198 3 3 0.0000169912
Arabidopsis lyrata scaffold_1 2 CH_aly_256 3 4 0.000067924
Aquilegia oxysepala CHR01 2 CH_aox_111 3 3 0.00000934909
Aquilegia oxysepala CHR01 2 CH_aox_127 3 4 0.0000373769
Arabidopsis thaliana Chr3 2 CH_ath_131 4 8 0.000000100994
Arabidopsis thaliana Chr1 2 CH_ath_183 3 3 0.00000403335
Amborella trichopoda AmTr_v1.0_scaffold00068 2 CH_atr_56 5 12 0.00000000202075
Brassica carinata ChrC07 2 CH_bca_582 3 3 0.0000501396
Camellia sinensis var. sinensis Chr14 2 CH_camsi_180 4 4 0.00000000211601
Cannabis sativa NC_044375.1 2 CH_cansat_162 4 13 0.00000361948
Cannabis sativa NC_044378.1 2 CH_cansat_194 3 4 0.0000343928
Corylus avellana 1 2 CH_cav_107 4 6 0.000000121257
Corylus avellana 6 2 CH_cav_212 4 21 0.000047977
Corylus avellana 6 2 CH_cav_384 3 7 0.00040955
Coffea canephora chr2 2 CH_ccan_109 3 11 0.00000204225
Coffea canephora chr1 2 CH_ccan_248 3 46 0.000131858
Citrus clementina scaffold_6 2 CH_ccl_357 3 4 0.000147411
Citrus clementina scaffold_4 2 CH_ccl_46 7 15 0.000000000000239547
Ceratophyllum demersum 5 2 CH_cde_14 5 10 0.000000000628765
Carpinus fangiana Cfa04 2 CH_cfa_330 3 12 0.000311578
Cardamine hirsuta Chr4 2 CH_chi_329 3 5 0.000234461
Cardamine hirsuta Chr5 2 CH_chi_386 3 6 0.000468601
Cardamine hirsuta Chr1 2 CH_chi_99 4 4 0.0000000202866
Carya illinoinensis Chr13 2 CH_cil_165 5 11 0.00000000411474
Carya illinoinensis Chr14 2 CH_cil_211 4 5 0.0000000626559
Citrullus lanatus CG_Chr07 2 CH_cla_88 4 16 0.0000146746
Cucumis melo chr07 2 CH_cme_128 3 3 0.0000076104
Chenopodium quinoa C_Quinoa_Scaffold_2716 2 CH_cqu_138 4 4 0.0000000520806
Chenopodium quinoa C_Quinoa_Scaffold_1480 2 CH_cqu_312 3 3 0.0000511214
Chenopodium quinoa C_Quinoa_Scaffold_2493 2 CH_cqu_328 5 48 0.0000856162
Chenopodium quinoa C_Quinoa_Scaffold_1280 2 CH_cqu_396 3 4 0.000204324
Capsella rubella scaffold_5 2 CH_cru_216 3 3 0.0000162307
Capsella rubella scaffold_1 2 CH_cru_217 3 3 0.0000162307
Cucumis sativus L. chr3 2 CH_csa_289 3 7 0.000416109
Cucumis sativus L. chr4 2 CH_csa_78 4 4 0.00000000845577
Davidia involucrata GWHABJS00000009 2 CH_din_195 3 3 0.00000664474
Durio zibethinus NW_019167893.1 2 CH_dzi_247 4 30 0.00016559
Eucalyptus grandis Chr07 2 CH_egr_447 4 8 0.000000100077
Erythranthe guttata scaffold_14 2 CH_egut_399 3 8 0.000302226
Eutrema salsugineum scaffold_4 2 CH_esa_140 3 3 0.0000226162
Fragaria vesca Fvb7 2 CH_fve_76 6 25 0.000000000377153
Gossypium hirsutum A08 2 CH_ghi_114 5 5 0.0000000000267995
Gossypium hirsutum D08 2 CH_ghi_134 5 6 0.000000000160691
Gossypium hirsutum A02 2 CH_ghi_441 3 3 0.0000424699
Gossypium hirsutum D12 2 CH_ghi_442 3 3 0.0000424699
Gossypium hirsutum D03 2 CH_ghi_736 3 5 0.000424177
Glycine max Gm14 2 CH_gma_312 3 3 0.0000266688
Glycine max Gm18 2 CH_gma_635 3 7 0.000931214
Gossypium raimondii Chr08 2 CH_gra_221 3 3 0.0000235223
Gossypium raimondii Chr03 2 CH_gra_331 3 5 0.000234927
Gossypium raimondii Chr04 2 CH_gra_66 5 5 0.0000000000147062
Hydrangea macrophylla Hma1.2p1_0292F.1 2 CH_hma_64 3 3 0.000000370226
Lupinus albus Lalb_Chr18 2 CH_lal_105 4 6 0.000000801501
Lupinus albus Lalb_Chr08 2 CH_lal_285 3 4 0.000203792
Lupinus albus Lalb_Chr15 2 CH_lal_342 3 5 0.000509066
Lotus japonicus chr6 2 CH_lja_117 5 13 0.0000000813401
Magnolia biondii Chr15 2 CH_mbi_96 6 62 0.00000000184885
Malus domestica Chr02 2 CH_mdo_294 4 10 0.00000312922
Malus domestica Chr07 2 CH_mdo_339 4 13 0.0000106362
Malus domestica Chr04 2 CH_mdo_412 3 4 0.0000852006
Manihot esculenta Chromosome18 2 CH_mes_329 3 5 0.000128507
Marchantia polymorpha scaffold_11 2 CH_mpo_130 2 3 0.000993889
Nelumbo nucifera chr2 2 CH_nnu_98 5 25 0.0000000922802
Punica granatum NC_045134.1 2 CH_pgr_169 3 3 0.00000818402
Punica granatum NC_045128.1 2 CH_pgr_251 3 6 0.000163441
Prunus persica Pp02 2 CH_ppe_164 5 12 0.000000026068
Prunus persica Pp04 2 CH_ppe_361 4 17 0.0000803775
Prunus persica Pp06 2 CH_ppe_92 5 5 0.0000000000331024
Pisum sativum chr5LG3 2 CH_psa_181 3 3 0.0000149143
Papaver somniferum NC_039358.1 2 CH_pso_336 5 30 0.00000378761
Papaver somniferum NW_020620492.1 2 CH_pso_49 8 21 0.00000000000000223746
Papaver somniferum NW_020620714.1 2 CH_pso_508 3 4 0.000181426
Papaver somniferum NC_039362.1 2 CH_pso_54 9 52 0.00000000000000481093
Papaver somniferum NC_039366.1 2 CH_pso_86 7 19 0.000000000000757318
Phaseolus vulgaris Chr06 2 CH_pvu_92 5 9 0.00000000269904
Quercus lobata 1 2 CH_qlo_172 6 8 0.000000000000536637
Quercus lobata 3 2 CH_qlo_617 3 3 0.0000310677
Quercus lobata 7 2 CH_qlo_618 3 3 0.0000310677
Quercus lobata 1 2 CH_qlo_736 3 4 0.000124186
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_374 4 16 0.00000252125
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_426 3 4 0.0000146804
Rhododendron simsii chr13 2 CH_rsi_372 3 5 0.0000711471
Simmondsia chinensis GWHAASQ00000025 2 CH_sci_128 3 4 0.0000669426
Sechium edule LG06 2 CH_sed_150 3 3 0.0000117576
Sequoiadendron giganteum chr7 2 CH_sgi_591 4 29 0.00000103484
Schrenkiella parvula ch6-6 2 CH_spa_146 3 3 0.0000241772
Schrenkiella parvula ch1-1 2 CH_spa_147 3 3 0.0000241772
Trochodendron aralioides group7 2 CH_tar_229 3 5 0.0000367406
Theobroma cacao Chromosome_10 2 CH_tca_203 4 9 0.000000886467
Tarenaya hassleriana NW_010969548.1 2 CH_tha_94 3 3 0.0000239743
Tarenaya hassleriana NW_010967707.1 2 CH_tha_95 3 3 0.0000239743
Trifolium pratense Tp57577_TGAC_v2_scaf_169 2 CH_tpr_147 4 9 0.00000244284
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_179 3 3 0.0000125513
Vigna mungo CM024075.1 2 CH_vmu_434 3 7 0.000982477
Vanilla planifolia CM028155.1 2 CH_vpl_97 3 3 0.00000668259
Vanilla planifolia JADCNL010000016.1 2 CH_vpl_98 3 3 0.00000668259
Vitis vinifera chr6 2 CH_vvi_163 4 9 0.000000302174

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001