Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (ANT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata Contig684 1 CH_bca_1093 2 2 0.000769551
Capsicum annuum PGAv.1.6.scaffold1238 1 CH_can_127 3 3 0.000000102372
Punica granatum NC_045130.1 1 CH_pgr_321 2 2 0.000450214
Punica granatum NC_045128.1 1 CH_pgr_322 2 2 0.000450214
Sequoiadendron giganteum chr9 1 CH_sgi_333 4 10 0.000000000364099
Solanum lycopersicum SL4.0ch02 1 CH_sly_519 2 2 0.000586941
Solanum pennellii Spenn-ch02 1 CH_spe_480 2 2 0.00044479
Solanum tuberosum ST4.03ch02 1 CH_stu_563 2 2 0.000512453
Brassica carinata Contig684 2 CH_bca_1093 2 2 0.000769551
Capsicum annuum PGAv.1.6.scaffold1238 2 CH_can_127 3 3 0.000000102372
Eucalyptus grandis Chr11 2 CH_egr_775 2 2 0.000175582
Punica granatum NC_045130.1 2 CH_pgr_321 2 2 0.000450214
Punica granatum NC_045128.1 2 CH_pgr_322 2 2 0.000450214
Sequoiadendron giganteum chr9 2 CH_sgi_333 4 10 0.000000000364099
Solanum lycopersicum SL4.0ch02 2 CH_sly_519 2 2 0.000586941
Solanum pennellii Spenn-ch02 2 CH_spe_480 2 2 0.00044479
Solanum tuberosum ST4.03ch02 2 CH_stu_563 2 2 0.000512453

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001