Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.VIT family.iron cation transporter (VTL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR05 | 1 | CH_aox_82 | 4 | 26 | 0.00000034627 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 1 | CH_bvu_19 | 5 | 5 | 0.0000000000000021148 |
| Cannabis sativa | NC_044377.1 | 1 | CH_cansat_378 | 2 | 2 | 0.000656642 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 1 | CH_can_151 | 3 | 3 | 0.000000358301 |
| Cicer arietinum L. | Ca_LG6_v3 | 1 | CH_car_41 | 3 | 3 | 0.0000000908664 |
| Cardamine hirsuta | Chr2 | 1 | CH_chi_373 | 2 | 2 | 0.000414723 |
| Carya illinoinensis | Chr05 | 1 | CH_cil_272 | 3 | 6 | 0.0000023045 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1611 | 1 | CH_cqu_139 | 4 | 14 | 0.0000000669966 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2081 | 1 | CH_cqu_47 | 5 | 6 | 0.0000000000000571584 |
| Capsella rubella | scaffold_5 | 1 | CH_cru_242 | 3 | 15 | 0.0000728698 |
| Davidia involucrata | GWHABJS00000005 | 1 | CH_din_51 | 5 | 20 | 0.000000000182997 |
| Durio zibethinus | NW_019167915.1 | 1 | CH_dzi_58 | 4 | 6 | 0.00000000147823 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_48 | 4 | 4 | 0.00000000000948749 |
| Gossypium hirsutum | A04 | 1 | CH_ghi_126 | 4 | 4 | 0.000000000103949 |
| Gossypium hirsutum | D04 | 1 | CH_ghi_151 | 4 | 5 | 0.000000000519671 |
| Glycine max | Gm05 | 1 | CH_gma_90 | 4 | 4 | 0.000000000298572 |
| Glycine max | Gm08 | 1 | CH_gma_91 | 4 | 4 | 0.000000000298572 |
| Gossypium raimondii | Chr12 | 1 | CH_gra_82 | 4 | 5 | 0.000000000161782 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_247 | 5 | 53 | 0.000000207687 |
| Lonicera japonica | GWHAAZE00000005 | 1 | CH_lonja_641 | 2 | 2 | 0.000898311 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_291 | 3 | 6 | 0.0000130713 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_77 | 5 | 10 | 0.00000000000609131 |
| Magnolia biondii | Chr17 | 1 | CH_mbi_116 | 5 | 36 | 0.00000000723551 |
| Malus domestica | Chr12 | 1 | CH_mdo_693 | 2 | 2 | 0.000568817 |
| Medicago truncatula | chr4 | 1 | CH_mtr_68 | 5 | 5 | 0.00000000000000119699 |
| Olea europaea | chr15 | 1 | CH_oeu_91 | 3 | 4 | 0.000000957271 |
| Petunia axillaris | Peaxi162Scf00001 | 1 | CH_pax_157 | 3 | 5 | 0.0000163264 |
| Petunia axillaris | Peaxi162Scf01290 | 1 | CH_pax_4 | 8 | 13 | 1.71222e-21 |
| Punica granatum | NC_045132.1 | 1 | CH_pgr_369 | 2 | 2 | 0.000750356 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_91 | 4 | 15 | 0.0000000406408 |
| Phaseolus vulgaris | Chr02 | 1 | CH_pvu_68 | 4 | 4 | 0.00000000004165 |
| Quercus lobata | 11 | 1 | CH_qlo_91 | 6 | 10 | 4.85304e-17 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_790 | 2 | 3 | 0.000717541 |
| Salvia bowleyana | GWHASIU00000003 | 1 | CH_sbo_73 | 5 | 21 | 0.0000000000365819 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_52 | 5 | 6 | 0.0000000000000672947 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_37 | 5 | 6 | 0.0000000000000221932 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_35 | 6 | 8 | 4.67564e-17 |
| Theobroma cacao | Chromosome_2 | 1 | CH_tca_442 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_6 | 6 | 7 | 3.28904e-17 |
| Vigna mungo | CM024069.1 | 1 | CH_vmu_39 | 4 | 5 | 0.000000000141624 |
| Vitis vinifera | chr12 | 1 | CH_vvi_392 | 2 | 2 | 0.000456378 |
| Aquilegia oxysepala | CHR05 | 2 | CH_aox_82 | 4 | 26 | 0.00000034627 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 2 | CH_bvu_19 | 5 | 5 | 0.0000000000000021148 |
| Cannabis sativa | NC_044377.1 | 2 | CH_cansat_378 | 2 | 2 | 0.000656642 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 2 | CH_can_151 | 3 | 3 | 0.000000358301 |
| Cicer arietinum L. | Ca_LG6_v3 | 2 | CH_car_41 | 3 | 3 | 0.0000000908664 |
| Cardamine hirsuta | Chr2 | 2 | CH_chi_373 | 2 | 2 | 0.000414723 |
| Carya illinoinensis | Chr05 | 2 | CH_cil_272 | 3 | 6 | 0.0000023045 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1611 | 2 | CH_cqu_139 | 4 | 14 | 0.0000000669966 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2081 | 2 | CH_cqu_47 | 5 | 6 | 0.0000000000000571584 |
| Capsella rubella | scaffold_5 | 2 | CH_cru_242 | 3 | 15 | 0.0000728698 |
| Davidia involucrata | GWHABJS00000005 | 2 | CH_din_51 | 5 | 20 | 0.000000000182997 |
| Durio zibethinus | NW_019167915.1 | 2 | CH_dzi_58 | 4 | 6 | 0.00000000147823 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_48 | 4 | 4 | 0.00000000000948749 |
| Eucalyptus grandis | Chr09 | 2 | CH_egr_466 | 3 | 3 | 0.000000179842 |
| Gossypium hirsutum | A04 | 2 | CH_ghi_126 | 4 | 4 | 0.000000000103949 |
| Gossypium hirsutum | D04 | 2 | CH_ghi_151 | 4 | 5 | 0.000000000519671 |
| Glycine max | Gm05 | 2 | CH_gma_90 | 4 | 4 | 0.000000000298572 |
| Glycine max | Gm08 | 2 | CH_gma_91 | 4 | 4 | 0.000000000298572 |
| Gossypium raimondii | Chr12 | 2 | CH_gra_82 | 4 | 5 | 0.000000000161782 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_247 | 5 | 53 | 0.000000207687 |
| Lonicera japonica | GWHAAZE00000005 | 2 | CH_lonja_641 | 2 | 2 | 0.000898311 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_291 | 3 | 6 | 0.0000130713 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_77 | 5 | 10 | 0.00000000000609131 |
| Magnolia biondii | Chr17 | 2 | CH_mbi_116 | 5 | 36 | 0.00000000723551 |
| Malus domestica | Chr12 | 2 | CH_mdo_693 | 2 | 2 | 0.000568817 |
| Olea europaea | chr15 | 2 | CH_oeu_91 | 3 | 4 | 0.000000957271 |
| Petunia axillaris | Peaxi162Scf00001 | 2 | CH_pax_157 | 3 | 5 | 0.0000163264 |
| Petunia axillaris | Peaxi162Scf01290 | 2 | CH_pax_4 | 8 | 13 | 1.71222e-21 |
| Punica granatum | NC_045132.1 | 2 | CH_pgr_369 | 2 | 2 | 0.000750356 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_91 | 4 | 15 | 0.0000000406408 |
| Phaseolus vulgaris | Chr02 | 2 | CH_pvu_68 | 4 | 4 | 0.00000000004165 |
| Quercus lobata | 11 | 2 | CH_qlo_91 | 6 | 10 | 4.85304e-17 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_790 | 2 | 3 | 0.000717541 |
| Salvia bowleyana | GWHASIU00000003 | 2 | CH_sbo_73 | 5 | 21 | 0.0000000000365819 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_52 | 5 | 6 | 0.0000000000000672947 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_37 | 5 | 6 | 0.0000000000000221932 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_35 | 6 | 8 | 4.67564e-17 |
| Theobroma cacao | Chromosome_2 | 2 | CH_tca_442 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_6 | 6 | 7 | 3.28904e-17 |
| Vigna mungo | CM024069.1 | 2 | CH_vmu_39 | 4 | 5 | 0.000000000141624 |
| Vitis vinifera | chr12 | 2 | CH_vvi_392 | 2 | 2 | 0.000456378 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |