Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR02 1 CH_aox_264 8 10 0.000389718
Arabidopsis thaliana Chr5 1 CH_ath_415 14 64 0.000704496
Corylus avellana 8 1 CH_cav_199 11 17 0.0000184551
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_222 20 72 0.0000102114
Vitis vinifera chr9 1 CH_vvi_421 7 8 0.000709367
Vitis vinifera chr11 1 CH_vvi_422 7 8 0.000709367
Aquilegia oxysepala CHR02 2 CH_aox_264 8 10 0.000389718
Arabidopsis thaliana Chr5 2 CH_ath_415 14 64 0.000704496
Corylus avellana 8 2 CH_cav_199 11 17 0.0000184551
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_222 20 72 0.0000102114
Vitis vinifera chr9 2 CH_vvi_421 7 8 0.000709367
Vitis vinifera chr11 2 CH_vvi_422 7 8 0.000709367

Available child term results

Ontology identifier Description Number of clusters
15.1.1.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic components.subunit 2 6
15.1.2.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 1 18
15.1.2.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 2 4
15.1.3.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 1 4
15.1.3.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 2 10
15.1.4.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol IV catalytic components.subunit 1 2
15.1.5.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic components.subunit 1 5
15.1.6 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components 2
15.1.6.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 3 4
15.1.6.10 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 12 12
15.1.6.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 4 10
15.1.6.3 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 5 16
15.1.6.4 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 6 2
15.1.6.5 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 7 51
15.1.6.6 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 8 9
15.1.6.7 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 9 3
15.1.6.8 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 10 3
15.1.6.9 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 11 4
15.2.1 RNA biosynthesis.RNA polymerase I-dependent transcription.basal transcription factor (TFIa/RRN3) 6
15.2.2 RNA biosynthesis.RNA polymerase I-dependent transcription.transcription initiation factor (BRP1) 2
15.2.3 RNA biosynthesis.RNA polymerase I-dependent transcription.transcription initiation factor (CCG/MEE12) 19
15.2.4 RNA biosynthesis.RNA polymerase I-dependent transcription.CCG-interacting transcriptional regulator (CBP) 4
15.2.5.1 RNA biosynthesis.RNA polymerase I-dependent transcription.TFIf basal transcription factor heterodimer.small subunit 2
15.2.5.2 RNA biosynthesis.RNA polymerase I-dependent transcription.TFIf basal transcription factor heterodimer.large subunit 15
15.2.6 RNA biosynthesis.RNA polymerase I-dependent transcription.transcription termination factor (TTF1) 22
15.3 RNA biosynthesis.RNA polymerase II-dependent transcription 6
15.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import 2
15.3.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.assembly factor (RPAP3) 11
15.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.nuclear import factor (RIMA) 4
15.3.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.nuclear import factor (GPN2/QQT1) 1
15.3.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II assembly and nuclear import.nuclear import factor (GPN3) 2
15.3.2.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.CTDK-I protein kinase complex.T-class cyclin regulatory component 15
15.3.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-I phosphatase 15
15.3.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.RNA polymerase-II phosphorylation/dephosphorylation.group-II phosphatase 7
15.3.3.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIa basal transcription factor heterodimer.large subunit 26
15.3.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIa basal transcription factor heterodimer.small subunit 2
15.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb) 20
15.3.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer 14
15.3.3.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer.subunit alpha 13
15.3.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer.subunit beta 4
15.3.3.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit alpha 5
15.3.3.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta 10
15.3.3.5.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL1 2
15.3.3.5.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component SSL2/XPB 16
15.3.3.5.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB1 8
15.3.3.5.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB2 4
15.3.3.5.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB4 8
15.3.3.5.1.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB5 5
15.3.3.5.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.CAK kinase module.cyclin component 2
15.3.3.5.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.CAK kinase module.cyclin-dependent kinase component 4
15.3.3.5.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.CAK kinase module.scaffolding component TFB3 6
15.3.3.6.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.NC2 regulator heterodimer.component alpha 8
15.3.3.6.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.NC2 regulator heterodimer.component beta 8
15.3.3.7.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC1 9
15.3.3.7.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC3/SRD2 4
15.3.3.7.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC4 4
15.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation 4
15.3.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes 2
15.3.4.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF5 12
15.3.4.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF6 15
15.3.4.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF10 11
15.3.4.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TAF module shared with SAGA/TFIId complexes.component TAF12 3
15.3.4.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.TATA-box-binding component 14
15.3.4.2.10 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF15 2
15.3.4.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component HAF/TAF1 4
15.3.4.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF2 17
15.3.4.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF4 25
15.3.4.2.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF7 6
15.3.4.2.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF8 4
15.3.4.2.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF11 4
15.3.4.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex 2
15.3.4.3.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component GCN5/ADA4 7
15.3.4.3.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA2 13
15.3.4.3.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component ADA3 12
15.3.4.3.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.HAT histone acetyltransferase module.component SGF29 14
15.3.4.3.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.DUB histone deubiquitinating module.component SGF11 4
15.3.4.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component ADA1 20
15.3.4.3.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component SPT20/ADA5 22
15.3.4.3.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component HAF/TAF1 18
15.3.4.3.3.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component SPT3/TAF13 4
15.3.4.4.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED6 13
15.3.4.4.1.10 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED30 2
15.3.4.4.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED8 10
15.3.4.4.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED11 8
15.3.4.4.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED17 6
15.3.4.4.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED18 6
15.3.4.4.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED19 2
15.3.4.4.1.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED20 12
15.3.4.4.1.8 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED22 7
15.3.4.4.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED4 1
15.3.4.4.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED7 10
15.3.4.4.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED9 4
15.3.4.4.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED10 4
15.3.4.4.2.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED21 12
15.3.4.4.2.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.middle module.component MED31 6
15.3.4.4.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED2/MED29/MED32 15
15.3.4.4.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED3/MED27 8
15.3.4.4.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED5/MED24/MED33 45
15.3.4.4.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED14 22
15.3.4.4.3.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED15 45
15.3.4.4.3.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED16 15
15.3.4.4.3.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED23 18
15.3.4.4.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED12 14
15.3.4.4.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED13 28
15.3.4.4.4.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component CDK8 2
15.3.4.4.4.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component CycC 26
15.3.4.4.5.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED25 32
15.3.4.4.5.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED26 6
15.3.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation 2
15.3.5.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component ELF7/PAF1 8
15.3.5.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP4/LEO1 14
15.3.5.1.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP5/RTF1 6
15.3.5.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component VIP6/CTR9 14
15.3.5.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.PAF1C transcription initiation and elongation complex.component CDC73/PHP 6
15.3.5.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP1 8
15.3.5.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP2 4
15.3.5.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP3 11
15.3.5.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP4 16
15.3.5.2.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP5 10
15.3.5.2.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.component ELP6 12
15.3.5.2.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.ELONGATOR transcription elongation complex.associated regulatory component DRL1 4
15.3.5.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT4 11
15.3.5.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5 6
15.3.5.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component SPT6 11
15.3.5.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT6-IWS1 transcription elongation complex.component IWS1 29
15.3.5.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.regulatory protein (MINIYO) 6
15.3.6.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) 14
15.3.6.2.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.R-loop reader protein (ALBA1/2) 10
15.3.6.2.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.ribonuclease (RNH1) 14
15.3.6.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase (TOP3b) 2
15.3.6.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.plastidial DNA:RNA hybrid helicase (RHON1) 2
15.4 RNA biosynthesis.RNA polymerase III-dependent transcription 2
15.4.2 RNA biosynthesis.RNA polymerase III-dependent transcription.transcription factor (TFIIIa) 22
15.4.3.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.component BRF1 4
15.4.3.2 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.component BDP1 14
15.4.4.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC1/Tau95 28
15.4.4.2 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC2/YY1 4
15.4.4.3 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.promotor-binding component TFC3 32
15.4.4.4 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC4/Tau131 30
15.4.4.5 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC7/Tau55 10
15.4.5.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIe transcription factor complex.component RPC82 16
15.4.5.2 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIe transcription factor complex.component RPC34 12
15.4.5.3 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIe transcription factor complex.component RPC31 4
15.4.6 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer 2
15.4.6.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer.small subunit 27
15.4.6.2 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer.large subunit 4
15.4.7 RNA biosynthesis.RNA polymerase III-dependent transcription.regulatory protein (MAF1) 4
15.5 RNA biosynthesis.transcriptional regulation 24
15.5.1.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-DBB) 4
15.5.1.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-CO) 4
15.5.1.3.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (A/B-GATA) 19
15.5.1.3.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (C-GATA) 69
15.5.1.3.3 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (D-GATA) 6
15.5.1.4 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (YABBY) 4
15.5.1.5 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) 49
15.5.11 RNA biosynthesis.transcriptional regulation.transcription factor (EIL) 12
15.5.12 RNA biosynthesis.transcriptional regulation.transcription factor (GRAS) 212
15.5.13 RNA biosynthesis.transcriptional regulation.transcription factor (HSF) 32
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) 349
15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) 73
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF) 55
15.5.17 RNA biosynthesis.transcriptional regulation.transcription factor (NAC) 248
15.5.18 RNA biosynthesis.transcriptional regulation.transcription factor (SBP) 17
15.5.19 RNA biosynthesis.transcriptional regulation.transcription factor (TCP) 26
15.5.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily 11
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB) 174
15.5.2.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related) 71
15.5.2.3 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (GARP) 5
15.5.20 RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix) 14
15.5.21 RNA biosynthesis.transcriptional regulation.transcription factor (TUB) 3
15.5.22.1 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.transcription factor (WRKY) 99
15.5.22.2 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.WRKY-regulatory transcriptional co-factor (VQ) 7
15.5.24 RNA biosynthesis.transcriptional regulation.transcription factor (AS2/LOB) 102
15.5.25 RNA biosynthesis.transcriptional regulation.transcription factor (ARID) 8
15.5.26 RNA biosynthesis.transcriptional regulation.transcription factor (CAMTA) 8
15.5.27 RNA biosynthesis.transcriptional regulation.transcription factor (ELF3) 22
15.5.28 RNA biosynthesis.transcriptional regulation.transcription factor (GeBP) 55
15.5.29 RNA biosynthesis.transcriptional regulation.transcription factor (PHD) 10
15.5.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily 4
15.5.3.1 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II) 25
15.5.3.10 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PINTOX) 8
15.5.3.11 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (NDX) 4
15.5.3.12 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD) 58
15.5.3.2 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP III) 2
15.5.3.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV) 58
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX) 4
15.5.3.5 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (BEL) 2
15.5.3.6 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (WOX) 29
15.5.3.7 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HOX) 4
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD) 4
15.5.3.9 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (LD) 17
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH) 98
15.5.31 RNA biosynthesis.transcriptional regulation.transcription factor (S1Fa) 7
15.5.32 RNA biosynthesis.transcriptional regulation.transcription factor (BBR/BPC) 18
15.5.33 RNA biosynthesis.transcriptional regulation.transcription factor (BSD) 4
15.5.34 RNA biosynthesis.transcriptional regulation.transcription factor (VOZ) 6
15.5.35 RNA biosynthesis.transcriptional regulation.transcription factor (OFP) 14
15.5.37 RNA biosynthesis.transcriptional regulation.transcription factor (BZR) 2
15.5.38 RNA biosynthesis.transcriptional regulation.transcription factor (LFY) 8
15.5.39 RNA biosynthesis.transcriptional regulation.transcription factor (LIM) 2
15.5.4 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily 4
15.5.4.1 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (bZIP) 15
15.5.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (DOG) 57
15.5.4.3 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (HY5) 4
15.5.4.4.1 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcription factor (TGA) 2
15.5.4.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcriptional co-activator (BOP) 4
15.5.40 RNA biosynthesis.transcriptional regulation.transcription factor (HRT) 27
15.5.41 RNA biosynthesis.transcriptional regulation.transcription factor (PLATZ) 7
15.5.42 RNA biosynthesis.transcriptional regulation.transcription factor (ULT) 14
15.5.43 RNA biosynthesis.transcriptional regulation.transcription factor (TIFY) 28
15.5.44 RNA biosynthesis.transcriptional regulation.transcription factor (FRS/FRF) 108
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS) 5
15.5.46 RNA biosynthesis.transcriptional regulation.transcription factor (SAP) 2
15.5.47 RNA biosynthesis.transcriptional regulation.transcription factor (HUA2) 8
15.5.48 RNA biosynthesis.transcriptional regulation.transcription factor (DPB3) 2
15.5.49.1 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YA 6
15.5.49.2 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB 25
15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC 27
15.5.5.1 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF) 25
15.5.5.2 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (REM) 278
15.5.5.3 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (RAV/NGATHA) 8
15.5.5.4 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-VAL) 6
15.5.5.5 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-ABI3) 18
15.5.50.1 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.component GRF 10
15.5.50.2 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.cofactor component GIF 8
15.5.51 RNA biosynthesis.transcriptional regulation.transcriptional repression 10
15.5.51.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (ECAP) 8
15.5.51.3 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (AFP/NINJA) 16
15.5.51.4 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (TIE/SPL) 10
15.5.51.5 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (NF-X1) 12
15.5.51.6.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.component LUG/LUH 33
15.5.51.6.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.adapter component SEU/SLK 38
15.5.51.7.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component PEAPOD 8
15.5.51.7.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component KIX 4
15.5.52 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (BET/GTE) 15
15.5.53 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (P15) 11
15.5.54 RNA biosynthesis.transcriptional regulation.transcriptional co-regulator (Pirin) 23
15.5.6 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily 4
15.5.6.1 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (RKD) 6
15.5.6.2 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (NLP) 70
15.5.7 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily 20
15.5.7.1 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF) 424
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB) 105
15.5.7.3 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2) 10
15.5.7.4 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (APD1) 3
15.5.7.5 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2-RAV) 18
15.5.8 RNA biosynthesis.transcriptional regulation.AHL transcription factor superfamily 7
15.5.8.2 RNA biosynthesis.transcriptional regulation.AHL transcription factor superfamily.clade-B transcription factor (AHL) 3
15.5.9 RNA biosynthesis.transcriptional regulation.transcription factor (TCX/CPP) 6
15.6 RNA biosynthesis.organelle machinery 4
15.6.1.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) 32
15.6.1.2.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components 47
15.6.1.2.2.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP1/TAC3 14
15.6.1.2.2.10 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP10/TrxZ 4
15.6.1.2.2.2 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP2/TAC2 6
15.6.1.2.2.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP3/TAC10 6
15.6.1.2.2.4 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP4/FSD3 2
15.6.1.2.2.5 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP5/TAC12 10
15.6.1.2.2.7 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP7/TAC14 3
15.6.1.2.2.8 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP8/TAC6 2
15.6.1.2.2.9 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP9/FSD2 6
15.6.1.2.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components 1
15.6.1.2.3.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC5 2
15.6.1.2.3.10 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.FSD2-interacting component PRDA1 6
15.6.1.2.3.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC9 8
15.6.1.2.3.4 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC13 4
15.6.1.2.3.5 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC15 3
15.6.1.2.3.7 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC17 2
15.6.1.2.3.8 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC18 6
15.6.1.2.3.9 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component PRIN2 27
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) 2
15.6.2.2 RNA biosynthesis.organelle machinery.transcriptional regulation.transcription factor (mTERF) 318

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001