Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrB08 | 1 | CH_bca_659 | 3 | 4 | 0.0000845609 |
| Capsicum annuum | PGAv.1.6.scaffold774 | 1 | CH_can_204 | 3 | 3 | 0.00000696127 |
| Capsicum annuum | PGAv.1.6.scaffold1186 | 1 | CH_can_245 | 3 | 5 | 0.0000695466 |
| Cicer arietinum L. | Ca_LG1_v3 | 1 | CH_car_11 | 5 | 8 | 0.00000000017898 |
| Carica papaya | supercontig_178 | 1 | CH_cpa_121 | 3 | 4 | 0.0000155029 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 1 | CH_eca_134 | 5 | 33 | 0.000000083261 |
| Erythranthe guttata | scaffold_11 | 1 | CH_egut_220 | 4 | 14 | 0.00000447287 |
| Fragaria x ananassa | Fvb6-3 | 1 | CH_fan_455 | 3 | 7 | 0.000237785 |
| Fragaria x ananassa | Fvb6-4 | 1 | CH_fan_573 | 3 | 9 | 0.00057035 |
| Helianthus annuus | HanXRQChr14 | 1 | CH_han_321 | 4 | 12 | 0.00000234059 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_362 | 3 | 3 | 0.0000090942 |
| Helianthus annuus | HanXRQChr12 | 1 | CH_han_41 | 6 | 6 | 0.00000000000000115142 |
| Hydrangea macrophylla | Hma1.2p1_1195F.1 | 1 | CH_hma_72 | 3 | 3 | 0.00000103663 |
| Lupinus albus | Lalb_Chr18 | 1 | CH_lal_66 | 4 | 4 | 0.0000000155961 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_306 | 3 | 9 | 0.0000356314 |
| Malus domestica | Chr09 | 1 | CH_mdo_179 | 4 | 6 | 0.0000000260598 |
| Medicago truncatula | chr7 | 1 | CH_mtr_175 | 5 | 11 | 0.000000000418865 |
| Medicago truncatula | chr2 | 1 | CH_mtr_307 | 4 | 9 | 0.000000278113 |
| Prunus persica | Pp04 | 1 | CH_ppe_223 | 3 | 3 | 0.00000137729 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_292 | 5 | 11 | 0.0000000000390254 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_204 | 4 | 6 | 0.00000135314 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_236 | 4 | 8 | 0.00000630213 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_360 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_361 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_362 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_536 | 3 | 5 | 0.00073189 |
| Solanum tuberosum | ST4.03ch10 | 1 | CH_stu_254 | 5 | 32 | 0.00000243108 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_65 | 6 | 8 | 0.00000000000024635 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_39 | 5 | 10 | 0.00000000095988 |
| Vanilla planifolia | CM028150.1 | 1 | CH_vpl_90 | 3 | 4 | 0.00000540364 |
| Brassica carinata | ChrB08 | 2 | CH_bca_659 | 3 | 4 | 0.0000845609 |
| Capsicum annuum | PGAv.1.6.scaffold774 | 2 | CH_can_204 | 3 | 3 | 0.00000696127 |
| Capsicum annuum | PGAv.1.6.scaffold1186 | 2 | CH_can_245 | 3 | 5 | 0.0000695466 |
| Cicer arietinum L. | Ca_LG1_v3 | 2 | CH_car_11 | 5 | 8 | 0.00000000017898 |
| Carica papaya | supercontig_178 | 2 | CH_cpa_121 | 3 | 4 | 0.0000155029 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 2 | CH_eca_134 | 5 | 33 | 0.000000083261 |
| Erythranthe guttata | scaffold_11 | 2 | CH_egut_220 | 4 | 14 | 0.00000447287 |
| Fragaria x ananassa | Fvb6-3 | 2 | CH_fan_455 | 3 | 7 | 0.000237785 |
| Fragaria x ananassa | Fvb6-4 | 2 | CH_fan_573 | 3 | 9 | 0.00057035 |
| Helianthus annuus | HanXRQChr14 | 2 | CH_han_321 | 4 | 12 | 0.00000234059 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_362 | 3 | 3 | 0.0000090942 |
| Helianthus annuus | HanXRQChr12 | 2 | CH_han_41 | 6 | 6 | 0.00000000000000115142 |
| Hydrangea macrophylla | Hma1.2p1_1195F.1 | 2 | CH_hma_72 | 3 | 3 | 0.00000103663 |
| Lupinus albus | Lalb_Chr18 | 2 | CH_lal_66 | 4 | 4 | 0.0000000155961 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_306 | 3 | 9 | 0.0000356314 |
| Malus domestica | Chr09 | 2 | CH_mdo_179 | 4 | 6 | 0.0000000260598 |
| Prunus persica | Pp04 | 2 | CH_ppe_223 | 3 | 3 | 0.00000137729 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_292 | 5 | 11 | 0.0000000000390254 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_204 | 4 | 6 | 0.00000135314 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_236 | 4 | 8 | 0.00000630213 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_360 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_361 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_362 | 3 | 3 | 0.0000733288 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_536 | 3 | 5 | 0.00073189 |
| Solanum tuberosum | ST4.03ch10 | 2 | CH_stu_254 | 5 | 32 | 0.00000243108 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_65 | 6 | 8 | 0.00000000000024635 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_39 | 5 | 10 | 0.00000000095988 |
| Vanilla planifolia | CM028150.1 | 2 | CH_vpl_90 | 3 | 4 | 0.00000540364 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |