Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (HSF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr11 | 1 | CH_acertr_458 | 3 | 7 | 0.000400961 |
| Brassica carinata | ChrC06 | 1 | CH_bca_234 | 4 | 4 | 0.0000000855626 |
| Brassica carinata | ChrB06 | 1 | CH_bca_36 | 9 | 54 | 0.000000000000344697 |
| Brassica napus | C04 | 1 | CH_bna_452 | 5 | 41 | 0.0000463717 |
| Brassica napus | C07 | 1 | CH_bna_484 | 3 | 3 | 0.000080972 |
| Brassica oleracea | C2 | 1 | CH_bol_238 | 4 | 14 | 0.0000355242 |
| Brassica oleracea | C7 | 1 | CH_bol_88 | 4 | 4 | 0.0000000357321 |
| Brassica rapa | A04 | 1 | CH_bra_341 | 3 | 5 | 0.000574837 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_433 | 3 | 7 | 0.000913955 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_428 | 4 | 28 | 0.000740682 |
| Eucalyptus grandis | Chr03 | 1 | CH_egr_18 | 14 | 24 | 4.5612e-33 |
| Lonicera japonica | GWHAAZE00000008 | 1 | CH_lonja_406 | 3 | 6 | 0.0000601969 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_250 | 3 | 4 | 0.000106788 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_383 | 3 | 6 | 0.000533243 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_14 | 12 | 17 | 9.85753e-35 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_314 | 3 | 3 | 0.0000159932 |
| Trochodendron aralioides | group0 | 1 | CH_tar_230 | 3 | 3 | 0.0000386042 |
| Acer truncatum | chr11 | 2 | CH_acertr_458 | 3 | 7 | 0.000400961 |
| Brassica carinata | ChrC06 | 2 | CH_bca_234 | 4 | 4 | 0.0000000855626 |
| Brassica carinata | ChrB06 | 2 | CH_bca_36 | 9 | 54 | 0.000000000000344697 |
| Brassica oleracea | C2 | 2 | CH_bol_238 | 4 | 14 | 0.0000355242 |
| Brassica oleracea | C7 | 2 | CH_bol_88 | 4 | 4 | 0.0000000357321 |
| Brassica rapa | A04 | 2 | CH_bra_341 | 3 | 5 | 0.000574837 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_433 | 3 | 7 | 0.000913955 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_428 | 4 | 28 | 0.000740682 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_18 | 14 | 24 | 4.5612e-33 |
| Lonicera japonica | GWHAAZE00000008 | 2 | CH_lonja_406 | 3 | 6 | 0.0000601969 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_250 | 3 | 4 | 0.000106788 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_383 | 3 | 6 | 0.000533243 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_14 | 12 | 17 | 9.85753e-35 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_314 | 3 | 3 | 0.0000159932 |
| Trochodendron aralioides | group0 | 2 | CH_tar_230 | 3 | 3 | 0.0000386042 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |