Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (DOG)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 1 | CH_acertr_561 | 2 | 2 | 0.00070497 |
| Actinidia chinensis | Lachesis_group12 | 1 | CH_ach_270 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_172 | 3 | 5 | 0.00000228668 |
| Aquilegia oxysepala | CHR01 | 1 | CH_aox_13 | 6 | 7 | 0.00000000000000156933 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_85 | 4 | 14 | 0.00000000494024 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 1 | CH_bvu_298 | 2 | 2 | 0.000827917 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 1 | CH_can_109 | 4 | 7 | 0.0000000195212 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_68 | 4 | 5 | 0.00000000017337 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 1 | CH_cqu_178 | 3 | 3 | 0.000000282885 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 1 | CH_cqu_179 | 3 | 3 | 0.000000282885 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_174 | 3 | 4 | 0.00000112251 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_134 | 3 | 3 | 0.000000512531 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_231 | 3 | 3 | 0.0000090667 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_51 | 4 | 5 | 0.000000000231825 |
| Fragaria vesca | Fvb1 | 1 | CH_fve_101 | 4 | 9 | 0.00000000540667 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_97 | 5 | 7 | 0.00000000000924422 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_269 | 3 | 4 | 0.00000576897 |
| Manihot esculenta | Chromosome17 | 1 | CH_mes_468 | 2 | 2 | 0.000610631 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_370 | 2 | 2 | 0.000261609 |
| Petunia axillaris | Peaxi162Scf00170 | 1 | CH_pax_61 | 4 | 7 | 0.0000000120599 |
| Quercus lobata | 5 | 1 | CH_qlo_1016 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_668 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr10 | 1 | CH_rsi_500 | 2 | 2 | 0.000387184 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_190 | 3 | 3 | 0.000000620117 |
| Schrenkiella parvula | ch7-4 | 1 | CH_spa_297 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_25 | 6 | 7 | 1.26691e-17 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_123 | 4 | 6 | 0.00000000299673 |
| Trochodendron aralioides | group9 | 1 | CH_tar_520 | 2 | 2 | 0.000600366 |
| Acer truncatum | chr10 | 2 | CH_acertr_561 | 2 | 2 | 0.00070497 |
| Actinidia chinensis | Lachesis_group12 | 2 | CH_ach_270 | 2 | 2 | 0.000814819 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_172 | 3 | 5 | 0.00000228668 |
| Aquilegia oxysepala | CHR01 | 2 | CH_aox_13 | 6 | 7 | 0.00000000000000156933 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_85 | 4 | 14 | 0.00000000494024 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 2 | CH_bvu_298 | 2 | 2 | 0.000827917 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 2 | CH_can_109 | 4 | 7 | 0.0000000195212 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_68 | 4 | 5 | 0.00000000017337 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 2 | CH_cqu_178 | 3 | 3 | 0.000000282885 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 2 | CH_cqu_179 | 3 | 3 | 0.000000282885 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_174 | 3 | 4 | 0.00000112251 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_134 | 3 | 3 | 0.000000512531 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_903 | 2 | 2 | 0.000585274 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_231 | 3 | 3 | 0.0000090667 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_51 | 4 | 5 | 0.000000000231825 |
| Fragaria vesca | Fvb1 | 2 | CH_fve_101 | 4 | 9 | 0.00000000540667 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_97 | 5 | 7 | 0.00000000000924422 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_269 | 3 | 4 | 0.00000576897 |
| Manihot esculenta | Chromosome17 | 2 | CH_mes_468 | 2 | 2 | 0.000610631 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_370 | 2 | 2 | 0.000261609 |
| Petunia axillaris | Peaxi162Scf00170 | 2 | CH_pax_61 | 4 | 7 | 0.0000000120599 |
| Quercus lobata | 5 | 2 | CH_qlo_1016 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_668 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr10 | 2 | CH_rsi_500 | 2 | 2 | 0.000387184 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_190 | 3 | 3 | 0.000000620117 |
| Schrenkiella parvula | ch7-4 | 2 | CH_spa_297 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_25 | 6 | 7 | 1.26691e-17 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_123 | 4 | 6 | 0.00000000299673 |
| Trochodendron aralioides | group9 | 2 | CH_tar_520 | 2 | 2 | 0.000600366 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |