Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (PHD)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00138 | 1 | CH_atr_141 | 3 | 4 | 0.0000137783 |
| Amborella trichopoda | AmTr_v1.0_scaffold00043 | 1 | CH_atr_19 | 7 | 10 | 8.14946e-18 |
| Carica papaya | supercontig_87 | 1 | CH_cpa_119 | 4 | 29 | 0.0000127693 |
| Rhododendron simsii | chr10 | 1 | CH_rsi_239 | 4 | 21 | 0.0000015866 |
| Utricularia gibba | unitig_699 | 1 | CH_ugi_271 | 3 | 34 | 0.000483008 |
| Amborella trichopoda | AmTr_v1.0_scaffold00138 | 2 | CH_atr_141 | 3 | 4 | 0.0000137783 |
| Amborella trichopoda | AmTr_v1.0_scaffold00043 | 2 | CH_atr_19 | 7 | 10 | 8.14946e-18 |
| Carica papaya | supercontig_87 | 2 | CH_cpa_119 | 4 | 29 | 0.0000127693 |
| Rhododendron simsii | chr10 | 2 | CH_rsi_239 | 4 | 21 | 0.0000015866 |
| Utricularia gibba | unitig_699 | 2 | CH_ugi_271 | 3 | 34 | 0.000483008 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |