Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.transcription factor (HRT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 1 CH_acertr_137 3 6 0.000000149084
Arabidopsis lyrata scaffold_8 1 CH_aly_331 2 2 0.000198013
Arabidopsis thaliana Chr5 1 CH_ath_280 2 2 0.0000859476
Brassica rapa A05 1 CH_bra_372 2 3 0.000772726
Citrus clementina scaffold_1 1 CH_ccl_335 2 2 0.0000820311
Cardamine hirsuta Chr8 1 CH_chi_319 2 2 0.000207361
Carica papaya supercontig_7 1 CH_cpa_240 2 2 0.0000950661
Capsella rubella scaffold_8 1 CH_cru_342 2 2 0.000219346
Fragaria vesca Fvb1 1 CH_fve_204 3 14 0.00000189428
Gossypium hirsutum A08 1 CH_ghi_206 3 3 0.0000000213895
Gossypium hirsutum D08 1 CH_ghi_207 3 3 0.0000000213895
Malus domestica Chr02 1 CH_mdo_677 2 6 0.000568774
Medicago truncatula chr6 1 CH_mtr_238 3 3 0.0000000101287
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_497 2 2 0.0000398653
Acer truncatum chr7 2 CH_acertr_137 3 6 0.000000149084
Arabidopsis lyrata scaffold_8 2 CH_aly_331 2 2 0.000198013
Arabidopsis thaliana Chr5 2 CH_ath_280 2 2 0.0000859476
Brassica rapa A05 2 CH_bra_372 2 3 0.000772726
Citrus clementina scaffold_1 2 CH_ccl_335 2 2 0.0000820311
Cardamine hirsuta Chr8 2 CH_chi_319 2 2 0.000207361
Carica papaya supercontig_7 2 CH_cpa_240 2 2 0.0000950661
Capsella rubella scaffold_8 2 CH_cru_342 2 2 0.000219346
Fragaria vesca Fvb1 2 CH_fve_204 3 14 0.00000189428
Gossypium hirsutum A08 2 CH_ghi_206 3 3 0.0000000213895
Gossypium hirsutum D08 2 CH_ghi_207 3 3 0.0000000213895
Malus domestica Chr02 2 CH_mdo_677 2 6 0.000568774
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_497 2 2 0.0000398653

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001