Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED15

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 1 CH_amhyb_115 2 2 0.0000841751
Arabidopsis thaliana Chr1 1 CH_ath_325 2 3 0.000257837
Brassica rapa A09 1 CH_bra_343 2 2 0.00064397
Cannabis sativa NC_044371.1 1 CH_cansat_270 2 3 0.000196986
Ceratophyllum demersum 2 1 CH_cde_213 2 2 0.000473878
Carya illinoinensis Chr02 1 CH_cil_525 2 2 0.000619828
Carya illinoinensis Chr13 1 CH_cil_526 2 2 0.000619828
Chenopodium quinoa C_Quinoa_Scaffold_4257 1 CH_cqu_481 2 2 0.000473821
Capsella rubella scaffold_1 1 CH_cru_394 2 3 0.000657999
Hydrangea macrophylla Hma1.2p1_0233F.1 1 CH_hma_126 2 2 0.000111086
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_441 2 2 0.000308404
Malus domestica Chr03 1 CH_mdo_632 2 2 0.000379212
Medicago truncatula chr8 1 CH_mtr_161 5 19 0.000000000114631
Medicago truncatula chr2 1 CH_mtr_430 3 6 0.00000835259
Olea europaea chr9 1 CH_oeu_219 2 2 0.000160137
Oryza sativa ssp. japonica chr12 1 CH_osa_305 2 2 0.000316874
Petunia axillaris Peaxi162Scf00583 1 CH_pax_330 2 3 0.000633164
Punica granatum NC_045134.1 1 CH_pgr_172 3 22 0.0000129973
Prunus persica Pp06 1 CH_ppe_398 2 2 0.000223789
Populus trichocarpa Chr03 1 CH_ptr_552 3 32 0.000867071
Sechium edule LG10 1 CH_sed_317 2 3 0.000642039
Sequoiadendron giganteum chr8 1 CH_sgi_556 3 9 0.000000298982
Trochodendron aralioides group2 1 CH_tar_244 2 2 0.0000600366
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 2 CH_amhyb_115 2 2 0.0000841751
Arabidopsis thaliana Chr1 2 CH_ath_325 2 3 0.000257837
Brassica rapa A09 2 CH_bra_343 2 2 0.00064397
Cannabis sativa NC_044371.1 2 CH_cansat_270 2 3 0.000196986
Ceratophyllum demersum 2 2 CH_cde_213 2 2 0.000473878
Carya illinoinensis Chr02 2 CH_cil_525 2 2 0.000619828
Carya illinoinensis Chr13 2 CH_cil_526 2 2 0.000619828
Chenopodium quinoa C_Quinoa_Scaffold_4257 2 CH_cqu_481 2 2 0.000473821
Capsella rubella scaffold_1 2 CH_cru_394 2 3 0.000657999
Hydrangea macrophylla Hma1.2p1_0233F.1 2 CH_hma_126 2 2 0.000111086
Lotus japonicus chr3 2 CH_lja_307 2 2 0.000214523
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_441 2 2 0.000308404
Malus domestica Chr03 2 CH_mdo_632 2 2 0.000379212
Olea europaea chr9 2 CH_oeu_219 2 2 0.000160137
Oryza sativa ssp. japonica chr12 2 CH_osa_305 2 2 0.000316874
Petunia axillaris Peaxi162Scf00583 2 CH_pax_330 2 3 0.000633164
Punica granatum NC_045134.1 2 CH_pgr_172 3 22 0.0000129973
Prunus persica Pp06 2 CH_ppe_398 2 2 0.000223789
Populus trichocarpa Chr03 2 CH_ptr_552 3 32 0.000867071
Sechium edule LG10 2 CH_sed_317 2 3 0.000642039
Sequoiadendron giganteum chr8 2 CH_sgi_556 3 9 0.000000298982
Trochodendron aralioides group2 2 CH_tar_244 2 2 0.0000600366

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001