Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (FRS/FRF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 1 | CH_acertr_75 | 9 | 36 | 0.00000000340021 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 1 | CH_amhyb_88 | 5 | 16 | 0.0000113017 |
| Aquilegia oxysepala | CHR02 | 1 | CH_aox_256 | 6 | 44 | 0.000313943 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_198 | 4 | 6 | 0.0000370274 |
| Coffea canephora | chr1 | 1 | CH_ccan_56 | 3 | 3 | 0.00000000152362 |
| Citrus clementina | scaffold_3 | 1 | CH_ccl_341 | 3 | 3 | 0.0000851535 |
| Carya illinoinensis | Chr13 | 1 | CH_cil_288 | 4 | 4 | 0.00000493928 |
| Corchorus olitorius | AWUE01014777.1 | 1 | CH_col_39 | 3 | 3 | 0.0000107521 |
| Carica papaya | supercontig_60 | 1 | CH_cpa_114 | 3 | 3 | 0.0000110625 |
| Carica papaya | supercontig_8 | 1 | CH_cpa_136 | 3 | 4 | 0.0000442242 |
| Carica papaya | supercontig_9 | 1 | CH_cpa_92 | 4 | 10 | 0.00000165078 |
| Durio zibethinus | NW_019167893.1 | 1 | CH_dzi_200 | 3 | 3 | 0.0000522512 |
| Durio zibethinus | NW_019167926.1 | 1 | CH_dzi_251 | 3 | 4 | 0.00020884 |
| Durio zibethinus | NW_019168026.1 | 1 | CH_dzi_252 | 3 | 4 | 0.00020884 |
| Erythranthe guttata | scaffold_9 | 1 | CH_egut_263 | 3 | 3 | 0.0000475922 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_485 | 3 | 3 | 0.000975873 |
| Gossypium hirsutum | A10 | 1 | CH_ghi_454 | 3 | 3 | 0.0000535978 |
| Gossypium hirsutum | D10 | 1 | CH_ghi_455 | 3 | 3 | 0.0000535978 |
| Gossypium raimondii | Chr11 | 1 | CH_gra_227 | 3 | 3 | 0.0000334986 |
| Magnolia biondii | Chr15 | 1 | CH_mbi_383 | 3 | 3 | 0.00011502 |
| Malus domestica | Chr04 | 1 | CH_mdo_186 | 4 | 4 | 0.0000000346635 |
| Malus domestica | Chr05 | 1 | CH_mdo_341 | 4 | 11 | 0.0000113829 |
| Malus domestica | Chr17 | 1 | CH_mdo_388 | 3 | 3 | 0.0000397417 |
| Malus domestica | Chr10 | 1 | CH_mdo_525 | 5 | 62 | 0.000183759 |
| Manihot esculenta | Chromosome04 | 1 | CH_mes_179 | 4 | 5 | 0.000000201033 |
| Manihot esculenta | Chromosome13 | 1 | CH_mes_268 | 3 | 3 | 0.0000399356 |
| Medicago truncatula | chr7 | 1 | CH_mtr_428 | 3 | 3 | 0.00000829542 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_18 | 8 | 16 | 7.43833e-17 |
| Nicotiana tabacum | Nitab4.5_0000038 | 1 | CH_nta_86 | 3 | 3 | 0.0000733281 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_240 | 3 | 4 | 0.0000877766 |
| Prunus persica | Pp01 | 1 | CH_ppe_110 | 6 | 9 | 0.000000000157688 |
| Prunus persica | Pp08 | 1 | CH_ppe_208 | 4 | 4 | 0.000000491959 |
| Prunus persica | Pp03 | 1 | CH_ppe_428 | 3 | 3 | 0.000244239 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_202 | 3 | 3 | 0.0000468573 |
| Papaver somniferum | NW_020649860.1 | 1 | CH_pso_526 | 4 | 7 | 0.000221662 |
| Populus trichocarpa | Chr07 | 1 | CH_ptr_139 | 5 | 8 | 0.00000000571126 |
| Populus trichocarpa | Chr03 | 1 | CH_ptr_327 | 3 | 3 | 0.0000711121 |
| Quercus lobata | 10 | 1 | CH_qlo_179 | 7 | 11 | 0.000000000000797382 |
| Quercus lobata | 9 | 1 | CH_qlo_583 | 5 | 20 | 0.0000121372 |
| Quercus lobata | 5 | 1 | CH_qlo_847 | 3 | 3 | 0.000248686 |
| Quercus lobata | 5 | 1 | CH_qlo_848 | 3 | 3 | 0.000248686 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_454 | 3 | 3 | 0.0000338276 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_622 | 3 | 4 | 0.000135223 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_695 | 3 | 5 | 0.000337838 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_571 | 4 | 6 | 0.000728677 |
| Salix brachista | GWHAAZH00000007 | 1 | CH_sbr_204 | 3 | 3 | 0.0000389842 |
| Trochodendron aralioides | group1 | 1 | CH_tar_153 | 4 | 9 | 0.000000395525 |
| Trochodendron aralioides | group17 | 1 | CH_tar_224 | 3 | 4 | 0.0000246446 |
| Theobroma cacao | Chromosome_6 | 1 | CH_tca_262 | 3 | 3 | 0.0000438997 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_263 | 3 | 3 | 0.0000438997 |
| Theobroma cacao | Chromosome_4 | 1 | CH_tca_93 | 6 | 16 | 0.00000000041696 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_221 | 1 | CH_tpr_389 | 3 | 3 | 0.000580409 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_184 | 4 | 11 | 0.0000161602 |
| Vitis vinifera | chr5 | 1 | CH_vvi_300 | 4 | 23 | 0.000146009 |
| Acer truncatum | chr4 | 2 | CH_acertr_75 | 9 | 36 | 0.00000000340021 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 2 | CH_amhyb_88 | 5 | 16 | 0.0000113017 |
| Aquilegia oxysepala | CHR02 | 2 | CH_aox_256 | 6 | 44 | 0.000313943 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_198 | 4 | 6 | 0.0000370274 |
| Coffea canephora | chr1 | 2 | CH_ccan_56 | 3 | 3 | 0.00000000152362 |
| Citrus clementina | scaffold_3 | 2 | CH_ccl_341 | 3 | 3 | 0.0000851535 |
| Carya illinoinensis | Chr13 | 2 | CH_cil_288 | 4 | 4 | 0.00000493928 |
| Corchorus olitorius | AWUE01014777.1 | 2 | CH_col_39 | 3 | 3 | 0.0000107521 |
| Carica papaya | supercontig_60 | 2 | CH_cpa_114 | 3 | 3 | 0.0000110625 |
| Carica papaya | supercontig_8 | 2 | CH_cpa_136 | 3 | 4 | 0.0000442242 |
| Carica papaya | supercontig_9 | 2 | CH_cpa_92 | 4 | 10 | 0.00000165078 |
| Durio zibethinus | NW_019167893.1 | 2 | CH_dzi_200 | 3 | 3 | 0.0000522512 |
| Durio zibethinus | NW_019167926.1 | 2 | CH_dzi_251 | 3 | 4 | 0.00020884 |
| Durio zibethinus | NW_019168026.1 | 2 | CH_dzi_252 | 3 | 4 | 0.00020884 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_809 | 3 | 4 | 0.000271956 |
| Erythranthe guttata | scaffold_9 | 2 | CH_egut_263 | 3 | 3 | 0.0000475922 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_485 | 3 | 3 | 0.000975873 |
| Gossypium hirsutum | A10 | 2 | CH_ghi_454 | 3 | 3 | 0.0000535978 |
| Gossypium hirsutum | D10 | 2 | CH_ghi_455 | 3 | 3 | 0.0000535978 |
| Gossypium raimondii | Chr11 | 2 | CH_gra_227 | 3 | 3 | 0.0000334986 |
| Magnolia biondii | Chr15 | 2 | CH_mbi_383 | 3 | 3 | 0.00011502 |
| Malus domestica | Chr04 | 2 | CH_mdo_186 | 4 | 4 | 0.0000000346635 |
| Malus domestica | Chr05 | 2 | CH_mdo_341 | 4 | 11 | 0.0000113829 |
| Malus domestica | Chr17 | 2 | CH_mdo_388 | 3 | 3 | 0.0000397417 |
| Malus domestica | Chr10 | 2 | CH_mdo_525 | 5 | 62 | 0.000183759 |
| Manihot esculenta | Chromosome04 | 2 | CH_mes_179 | 4 | 5 | 0.000000201033 |
| Manihot esculenta | Chromosome13 | 2 | CH_mes_268 | 3 | 3 | 0.0000399356 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_18 | 8 | 16 | 7.43833e-17 |
| Nicotiana tabacum | Nitab4.5_0000038 | 2 | CH_nta_86 | 3 | 3 | 0.0000733281 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_240 | 3 | 4 | 0.0000877766 |
| Prunus persica | Pp01 | 2 | CH_ppe_110 | 6 | 9 | 0.000000000157688 |
| Prunus persica | Pp08 | 2 | CH_ppe_208 | 4 | 4 | 0.000000491959 |
| Prunus persica | Pp03 | 2 | CH_ppe_428 | 3 | 3 | 0.000244239 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_202 | 3 | 3 | 0.0000468573 |
| Papaver somniferum | NW_020649860.1 | 2 | CH_pso_526 | 4 | 7 | 0.000221662 |
| Populus trichocarpa | Chr07 | 2 | CH_ptr_139 | 5 | 8 | 0.00000000571126 |
| Populus trichocarpa | Chr03 | 2 | CH_ptr_327 | 3 | 3 | 0.0000711121 |
| Quercus lobata | 10 | 2 | CH_qlo_179 | 7 | 11 | 0.000000000000797382 |
| Quercus lobata | 9 | 2 | CH_qlo_583 | 5 | 20 | 0.0000121372 |
| Quercus lobata | 5 | 2 | CH_qlo_847 | 3 | 3 | 0.000248686 |
| Quercus lobata | 5 | 2 | CH_qlo_848 | 3 | 3 | 0.000248686 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_454 | 3 | 3 | 0.0000338276 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_622 | 3 | 4 | 0.000135223 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_695 | 3 | 5 | 0.000337838 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_571 | 4 | 6 | 0.000728677 |
| Salix brachista | GWHAAZH00000007 | 2 | CH_sbr_204 | 3 | 3 | 0.0000389842 |
| Trochodendron aralioides | group1 | 2 | CH_tar_153 | 4 | 9 | 0.000000395525 |
| Trochodendron aralioides | group17 | 2 | CH_tar_224 | 3 | 4 | 0.0000246446 |
| Theobroma cacao | Chromosome_6 | 2 | CH_tca_262 | 3 | 3 | 0.0000438997 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_263 | 3 | 3 | 0.0000438997 |
| Theobroma cacao | Chromosome_4 | 2 | CH_tca_93 | 6 | 16 | 0.00000000041696 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_221 | 2 | CH_tpr_389 | 3 | 3 | 0.000580409 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_184 | 4 | 11 | 0.0000161602 |
| Vitis vinifera | chr5 | 2 | CH_vvi_300 | 4 | 23 | 0.000146009 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |