Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_369 | 1 | CH_aag_163 | 2 | 2 | 0.000481541 |
| Avicennia marina | ScioBoG_4119_HRSCAF_4138 | 1 | CH_ama_70 | 3 | 3 | 0.000118878 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 1 | CH_arhy_212 | 4 | 4 | 0.0000000695967 |
| Brassica napus | A09 | 1 | CH_bna_395 | 4 | 13 | 0.0000156835 |
| Brassica rapa | A09 | 1 | CH_bra_250 | 3 | 7 | 0.000165268 |
| Camellia sinensis var. sinensis | Chr11 | 1 | CH_camsi_577 | 3 | 5 | 0.0000724851 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_676 | 3 | 6 | 0.000144912 |
| Cannabis sativa | NC_044377.1 | 1 | CH_cansat_315 | 3 | 7 | 0.000257603 |
| Lonicera japonica | GWHAAZE00000005 | 1 | CH_lonja_408 | 3 | 4 | 0.0000629092 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_150 | 5 | 28 | 0.00000202488 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_187 | 4 | 7 | 0.000000136535 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_431 | 4 | 6 | 0.00000000671987 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_197 | 3 | 4 | 0.0000590273 |
| Anthoceros agrestis | Sc2ySwM_369 | 2 | CH_aag_163 | 2 | 2 | 0.000481541 |
| Avicennia marina | ScioBoG_4119_HRSCAF_4138 | 2 | CH_ama_70 | 3 | 3 | 0.000118878 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 2 | CH_arhy_212 | 4 | 4 | 0.0000000695967 |
| Brassica rapa | A09 | 2 | CH_bra_250 | 3 | 7 | 0.000165268 |
| Camellia sinensis var. sinensis | Chr11 | 2 | CH_camsi_577 | 3 | 5 | 0.0000724851 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_676 | 3 | 6 | 0.000144912 |
| Cannabis sativa | NC_044377.1 | 2 | CH_cansat_315 | 3 | 7 | 0.000257603 |
| Lonicera japonica | GWHAAZE00000005 | 2 | CH_lonja_408 | 3 | 4 | 0.0000629092 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_150 | 5 | 28 | 0.00000202488 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_187 | 4 | 7 | 0.000000136535 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_431 | 4 | 6 | 0.00000000671987 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_197 | 3 | 4 | 0.0000590273 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |