Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer.small subunit

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 1 CH_amhyb_60 3 10 0.00000127506
Camellia sinensis var. sinensis Chr1 1 CH_camsi_708 2 4 0.000275116
Corylus avellana 1 1 CH_cav_422 2 2 0.000460017
Ceratophyllum demersum 3 1 CH_cde_276 2 2 0.000789796
Ceratophyllum demersum 8 1 CH_cde_277 2 2 0.000789796
Cardamine hirsuta Chr2 1 CH_chi_246 2 2 0.0000691204
Chenopodium quinoa C_Quinoa_Scaffold_2773 1 CH_cqu_474 2 3 0.000426422
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_337 2 2 0.0000514007
Olea europaea scaffold629 1 CH_oeu_88 3 12 0.00000094007
Pisum sativum chr2LG1 1 CH_psa_230 2 2 0.0000521635
Sequoiadendron giganteum chr5 1 CH_sgi_107 6 9 5.18628e-19
Sapria himalayana scaffold2_22354274 1 CH_shi_43 3 6 0.0000000980824
Zea mays 6 1 CH_zma_159 2 2 0.0000511313
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 2 CH_amhyb_60 3 10 0.00000127506
Camellia sinensis var. sinensis Chr1 2 CH_camsi_708 2 4 0.000275116
Corylus avellana 1 2 CH_cav_422 2 2 0.000460017
Ceratophyllum demersum 3 2 CH_cde_276 2 2 0.000789796
Ceratophyllum demersum 8 2 CH_cde_277 2 2 0.000789796
Cardamine hirsuta Chr2 2 CH_chi_246 2 2 0.0000691204
Chenopodium quinoa C_Quinoa_Scaffold_2773 2 CH_cqu_474 2 3 0.000426422
Gossypium hirsutum D11 2 CH_ghi_864 2 3 0.000801015
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_337 2 2 0.0000514007
Olea europaea scaffold629 2 CH_oeu_88 3 12 0.00000094007
Pisum sativum chr2LG1 2 CH_psa_230 2 2 0.0000521635
Sequoiadendron giganteum chr5 2 CH_sgi_107 6 9 5.18628e-19
Sapria himalayana scaffold2_22354274 2 CH_shi_43 3 6 0.0000000980824
Zea mays 6 2 CH_zma_159 2 2 0.0000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001