Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-ABI3)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Capsicum annuum PGAv.1.6.scaffold771 1 CH_can_407 2 2 0.000495663
Glycine max Gm20 1 CH_gma_565 2 2 0.000569336
Olea europaea chr22 1 CH_oeu_407 2 2 0.000800683
Oryza sativa ssp. japonica chr04 1 CH_osa_366 2 2 0.000528123
Sequoiadendron giganteum chr7 1 CH_sgi_147 6 10 5.9875e-16
Solanum lycopersicum SL4.0ch06 1 CH_sly_422 2 2 0.000176082
Schrenkiella parvula ch2-4 1 CH_spa_259 2 2 0.000472404
Solanum pennellii Spenn-ch06 1 CH_spe_370 2 2 0.000133437
Solanum tuberosum ST4.03ch06 1 CH_stu_470 2 2 0.000153736
Capsicum annuum PGAv.1.6.scaffold771 2 CH_can_407 2 2 0.000495663
Glycine max Gm20 2 CH_gma_565 2 2 0.000569336
Olea europaea chr22 2 CH_oeu_407 2 2 0.000800683
Oryza sativa ssp. japonica chr04 2 CH_osa_366 2 2 0.000528123
Sequoiadendron giganteum chr7 2 CH_sgi_147 6 10 5.9875e-16
Solanum lycopersicum SL4.0ch06 2 CH_sly_422 2 2 0.000176082
Schrenkiella parvula ch2-4 2 CH_spa_259 2 2 0.000472404
Solanum pennellii Spenn-ch06 2 CH_spe_370 2 2 0.000133437
Solanum tuberosum ST4.03ch06 2 CH_stu_470 2 2 0.000153736

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001