Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (WOX)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_359 | 3 | 8 | 0.000100851 |
| Medicago truncatula | chr4 | 1 | CH_mtr_386 | 3 | 3 | 0.00000245368 |
| Olea europaea | chr11 | 1 | CH_oeu_123 | 3 | 3 | 0.0000156175 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_138 | 14 | 78 | 0.0000000000382396 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_139 | 14 | 78 | 0.0000000000382396 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_237 | 12 | 77 | 0.0000000267789 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_238 | 12 | 78 | 0.0000000314383 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_298 | 11 | 72 | 0.000000315671 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_306 | 11 | 73 | 0.000000369229 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_326 | 11 | 78 | 0.000000780882 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_456 | 6 | 15 | 0.0000372726 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_1263 | 3 | 5 | 0.00032489 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_316 | 5 | 6 | 0.000000000145835 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_64 | 10 | 13 | 1.98898e-24 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_701 | 3 | 3 | 0.0000325333 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_359 | 3 | 8 | 0.000100851 |
| Olea europaea | chr11 | 2 | CH_oeu_123 | 3 | 3 | 0.0000156175 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_138 | 14 | 78 | 0.0000000000382396 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_139 | 14 | 78 | 0.0000000000382396 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_237 | 12 | 77 | 0.0000000267789 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_238 | 12 | 78 | 0.0000000314383 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_298 | 11 | 72 | 0.000000315671 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_306 | 11 | 73 | 0.000000369229 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_326 | 11 | 78 | 0.000000780882 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_456 | 6 | 15 | 0.0000372726 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_1263 | 3 | 5 | 0.00032489 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_316 | 5 | 6 | 0.000000000145835 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_64 | 10 | 13 | 1.98898e-24 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_701 | 3 | 3 | 0.0000325333 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |