Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_14 | 1 | CH_amhyb_170 | 3 | 4 | 0.000155214 |
| Aquilegia oxysepala | CHR04 | 1 | CH_aox_193 | 3 | 4 | 0.000100268 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_208 | 4 | 21 | 0.0000247104 |
| Amborella trichopoda | AmTr_v1.0_scaffold00160 | 1 | CH_atr_71 | 4 | 5 | 0.000000023003 |
| Brassica carinata | ChrC09 | 1 | CH_bca_357 | 5 | 13 | 0.00000110262 |
| Brassica napus | C03 | 1 | CH_bna_152 | 5 | 7 | 0.0000000121738 |
| Brassica napus | C01 | 1 | CH_bna_392 | 4 | 7 | 0.0000146648 |
| Brassica oleracea | C3 | 1 | CH_bol_427 | 3 | 4 | 0.000914411 |
| Brassica oleracea | C1 | 1 | CH_bol_99 | 5 | 11 | 0.0000000877219 |
| Brassica rapa | A08 | 1 | CH_bra_249 | 3 | 3 | 0.000164887 |
| Brassica rapa | A01 | 1 | CH_bra_59 | 5 | 5 | 0.0000000021365 |
| Cicer arietinum L. | Ca_LG7_v3 | 1 | CH_car_27 | 6 | 24 | 0.0000000165398 |
| Coffea canephora | chr8 | 1 | CH_ccan_52 | 5 | 52 | 0.000000000461417 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_165 | 4 | 7 | 0.00000284373 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_332 | 3 | 4 | 0.000279913 |
| Eutrema salsugineum | scaffold_15 | 1 | CH_esa_10 | 8 | 9 | 1.09784e-17 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_297 | 3 | 4 | 0.000527506 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_660 | 4 | 26 | 0.000416185 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_136 | 4 | 5 | 0.0000000217283 |
| Malus domestica | Chr14 | 1 | CH_mdo_524 | 3 | 4 | 0.000179557 |
| Medicago truncatula | chr5 | 1 | CH_mtr_321 | 4 | 6 | 0.000000348913 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_190 | 4 | 15 | 0.0000236215 |
| Selaginella moellendorffii | scaffold_41 | 1 | CH_smo_133 | 3 | 4 | 0.000312674 |
| Selaginella moellendorffii | scaffold_111 | 1 | CH_smo_20 | 5 | 5 | 0.000000000158661 |
| Schrenkiella parvula | ch7-4 | 1 | CH_spa_54 | 5 | 6 | 0.000000000651383 |
| Trochodendron aralioides | group6 | 1 | CH_tar_227 | 4 | 11 | 0.0000347092 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_14 | 2 | CH_amhyb_170 | 3 | 4 | 0.000155214 |
| Aquilegia oxysepala | CHR04 | 2 | CH_aox_193 | 3 | 4 | 0.000100268 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_208 | 4 | 21 | 0.0000247104 |
| Amborella trichopoda | AmTr_v1.0_scaffold00160 | 2 | CH_atr_71 | 4 | 5 | 0.000000023003 |
| Brassica carinata | ChrC09 | 2 | CH_bca_357 | 5 | 13 | 0.00000110262 |
| Brassica oleracea | C3 | 2 | CH_bol_427 | 3 | 4 | 0.000914411 |
| Brassica oleracea | C1 | 2 | CH_bol_99 | 5 | 11 | 0.0000000877219 |
| Brassica rapa | A08 | 2 | CH_bra_249 | 3 | 3 | 0.000164887 |
| Brassica rapa | A01 | 2 | CH_bra_59 | 5 | 5 | 0.0000000021365 |
| Cicer arietinum L. | Ca_LG7_v3 | 2 | CH_car_27 | 6 | 24 | 0.0000000165398 |
| Coffea canephora | chr8 | 2 | CH_ccan_52 | 5 | 52 | 0.000000000461417 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_165 | 4 | 7 | 0.00000284373 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_332 | 3 | 4 | 0.000279913 |
| Eutrema salsugineum | scaffold_15 | 2 | CH_esa_10 | 8 | 9 | 1.09784e-17 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_297 | 3 | 4 | 0.000527506 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_660 | 4 | 26 | 0.000416185 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_136 | 4 | 5 | 0.0000000217283 |
| Malus domestica | Chr14 | 2 | CH_mdo_524 | 3 | 4 | 0.000179557 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_190 | 4 | 15 | 0.0000236215 |
| Selaginella moellendorffii | scaffold_41 | 2 | CH_smo_133 | 3 | 4 | 0.000312674 |
| Selaginella moellendorffii | scaffold_111 | 2 | CH_smo_20 | 5 | 5 | 0.000000000158661 |
| Schrenkiella parvula | ch7-4 | 2 | CH_spa_54 | 5 | 6 | 0.000000000651383 |
| Trochodendron aralioides | group6 | 2 | CH_tar_227 | 4 | 11 | 0.0000347092 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |