Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED5/MED24/MED33

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group22 1 CH_ach_258 2 2 0.000814819
Brassica carinata ChrC02 1 CH_bca_1148 2 2 0.000961939
Brassica carinata ChrB06 1 CH_bca_67 4 5 0.0000000000307683
Corylus avellana 1 1 CH_cav_121 3 3 0.000000308618
Corylus avellana 2 1 CH_cav_148 3 4 0.00000123428
Carya illinoinensis Chr02 1 CH_cil_524 2 2 0.000619828
Citrullus lanatus CG_Chr07 1 CH_cla_160 2 2 0.000266134
Davidia involucrata GWHABJS00000016 1 CH_din_408 2 2 0.000300075
Fragaria x ananassa Fvb4-1 1 CH_fan_101 4 11 0.0000000149167
Fragaria vesca Fvb4 1 CH_fve_386 2 2 0.000353461
Lupinus albus Lalb_Chr18 1 CH_lal_85 3 3 0.0000000826343
Magnolia biondii Chr03 1 CH_mbi_193 3 7 0.000000495247
Malus domestica Chr13 1 CH_mdo_730 2 2 0.000796344
Olea europaea chr11 1 CH_oeu_288 2 2 0.000320273
Prunus persica Pp01 1 CH_ppe_447 2 2 0.000447577
Quercus lobata 9 1 CH_qlo_614 3 9 0.0000281888
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_783 2 3 0.000717541
Sequoiadendron giganteum chr1 1 CH_sgi_172 5 10 0.0000000000000106446
Trochodendron aralioides group16 1 CH_tar_128 3 3 0.000000108135
Trochodendron aralioides group7 1 CH_tar_549 2 2 0.000900549
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_99 3 3 0.000000171909
Vanilla planifolia CM028154.1 1 CH_vpl_15 4 4 0.00000000000121029
Actinidia chinensis Lachesis_group22 2 CH_ach_258 2 2 0.000814819
Brassica carinata ChrC02 2 CH_bca_1148 2 2 0.000961939
Brassica carinata ChrB06 2 CH_bca_67 4 5 0.0000000000307683
Corylus avellana 1 2 CH_cav_121 3 3 0.000000308618
Corylus avellana 2 2 CH_cav_148 3 4 0.00000123428
Carya illinoinensis Chr02 2 CH_cil_524 2 2 0.000619828
Citrullus lanatus CG_Chr07 2 CH_cla_160 2 2 0.000266134
Davidia involucrata GWHABJS00000016 2 CH_din_408 2 2 0.000300075
Eucalyptus grandis Chr01 2 CH_egr_826 2 2 0.000351165
Fragaria x ananassa Fvb4-1 2 CH_fan_101 4 11 0.0000000149167
Fragaria vesca Fvb4 2 CH_fve_386 2 2 0.000353461
Lupinus albus Lalb_Chr18 2 CH_lal_85 3 3 0.0000000826343
Magnolia biondii Chr03 2 CH_mbi_193 3 7 0.000000495247
Malus domestica Chr13 2 CH_mdo_730 2 2 0.000796344
Olea europaea chr11 2 CH_oeu_288 2 2 0.000320273
Prunus persica Pp01 2 CH_ppe_447 2 2 0.000447577
Quercus lobata 9 2 CH_qlo_614 3 9 0.0000281888
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_783 2 3 0.000717541
Sequoiadendron giganteum chr1 2 CH_sgi_172 5 10 0.0000000000000106446
Trochodendron aralioides group16 2 CH_tar_128 3 3 0.000000108135
Trochodendron aralioides group7 2 CH_tar_549 2 2 0.000900549
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_99 3 3 0.000000171909
Vanilla planifolia CM028154.1 2 CH_vpl_15 4 4 0.00000000000121029

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001