Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 1 | CH_acertr_371 | 3 | 4 | 0.000162563 |
| Aquilegia oxysepala | CHR07 | 1 | CH_aox_53 | 4 | 4 | 0.0000000316886 |
| Corylus avellana | 4 | 1 | CH_cav_218 | 3 | 4 | 0.0000577115 |
| Ceratophyllum demersum | 1 | 1 | CH_cde_131 | 3 | 3 | 0.000115475 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_362 | 4 | 21 | 0.000629719 |
| Carya illinoinensis | Chr04 | 1 | CH_cil_388 | 3 | 3 | 0.000177823 |
| Daucus carota | DCARv2_Chr6 | 1 | CH_dca_263 | 3 | 3 | 0.000127065 |
| Helianthus annuus | HanXRQChr02 | 1 | CH_han_27 | 10 | 20 | 9.93564e-19 |
| Hydrangea macrophylla | Hma1.2p1_0371F.1 | 1 | CH_hma_95 | 3 | 3 | 0.0000374669 |
| Lonicera japonica | GWHAAZE00000009 | 1 | CH_lonja_336 | 4 | 10 | 0.0000493252 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_593 | 3 | 4 | 0.000595797 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_60 | 7 | 8 | 0.00000000000000673459 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_309 | 3 | 3 | 0.0000468584 |
| Magnolia biondii | Chr12 | 1 | CH_mbi_482 | 3 | 4 | 0.000187289 |
| Malus domestica | Chr04 | 1 | CH_mdo_407 | 3 | 3 | 0.0000665583 |
| Malus domestica | Chr15 | 1 | CH_mdo_705 | 3 | 5 | 0.000664517 |
| Medicago truncatula | chr1 | 1 | CH_mtr_330 | 4 | 5 | 0.000000441019 |
| Medicago truncatula | chr2 | 1 | CH_mtr_564 | 3 | 3 | 0.000078133 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_310 | 3 | 4 | 0.000121518 |
| Olea europaea | chr13 | 1 | CH_oeu_100 | 4 | 6 | 0.00000250828 |
| Olea europaea | chr19 | 1 | CH_oeu_199 | 3 | 3 | 0.000118477 |
| Olea europaea | chr14 | 1 | CH_oeu_200 | 3 | 3 | 0.000118477 |
| Oryza sativa ssp. japonica | chr04 | 1 | CH_osa_178 | 3 | 3 | 0.0000169863 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_41 | 6 | 7 | 0.00000000000196369 |
| Prunus persica | Pp05 | 1 | CH_ppe_16 | 10 | 10 | 5.6908e-25 |
| Pisum sativum | chr4LG4 | 1 | CH_psa_129 | 4 | 5 | 0.000000347147 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_240 | 3 | 3 | 0.0000619594 |
| Papaver somniferum | NW_020624376.1 | 1 | CH_pso_278 | 4 | 5 | 0.00000039937 |
| Papaver somniferum | NW_020627707.1 | 1 | CH_pso_279 | 4 | 5 | 0.00000039937 |
| Papaver somniferum | NW_020625487.1 | 1 | CH_pso_29 | 9 | 15 | 2.67241e-19 |
| Papaver somniferum | NC_039368.1 | 1 | CH_pso_3 | 17 | 25 | 1.57125e-41 |
| Papaver somniferum | NW_020618825.1 | 1 | CH_pso_447 | 3 | 3 | 0.0000835043 |
| Papaver somniferum | NC_039362.1 | 1 | CH_pso_564 | 3 | 4 | 0.000333774 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_400 | 3 | 3 | 0.000189532 |
| Quercus lobata | 1 | 1 | CH_qlo_1024 | 3 | 4 | 0.000800509 |
| Quercus lobata | 6 | 1 | CH_qlo_169 | 7 | 11 | 0.000000000000474648 |
| Quercus lobata | 9 | 1 | CH_qlo_180 | 7 | 12 | 0.00000000000113756 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_116 | 8 | 55 | 0.00000000000369205 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_471 | 3 | 4 | 0.000308045 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_138 | 7 | 48 | 0.0000000648798 |
| Salvia bowleyana | GWHASIU00000007 | 1 | CH_sbo_78 | 6 | 10 | 0.000000000131286 |
| Salix brachista | GWHAAZH00000001 | 1 | CH_sbr_310 | 3 | 3 | 0.000236532 |
| Salix brachista | GWHAAZH00000003 | 1 | CH_sbr_408 | 3 | 4 | 0.000944755 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_148 | 7 | 12 | 7.38868e-16 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_669 | 3 | 3 | 0.0000104125 |
| Schrenkiella parvula | ch2-1 | 1 | CH_spa_198 | 3 | 3 | 0.000182259 |
| Solanum pennellii | Spenn-ch03 | 1 | CH_spe_254 | 3 | 3 | 0.0000421109 |
| Solanum tuberosum | ST4.03ch10 | 1 | CH_stu_414 | 3 | 3 | 0.0000977083 |
| Solanum tuberosum | ST4.03ch08 | 1 | CH_stu_641 | 3 | 5 | 0.000975119 |
| Solanum tuberosum | ST4.03ch03 | 1 | CH_stu_96 | 5 | 5 | 0.000000000163597 |
| Trochodendron aralioides | group1 | 1 | CH_tar_297 | 3 | 3 | 0.0000935153 |
| Tarenaya hassleriana | NW_010965372.1 | 1 | CH_tha_157 | 3 | 3 | 0.000237906 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_14 | 7 | 10 | 0.0000000000000272718 |
| Acer truncatum | chr13 | 2 | CH_acertr_371 | 3 | 4 | 0.000162563 |
| Aquilegia oxysepala | CHR07 | 2 | CH_aox_53 | 4 | 4 | 0.0000000316886 |
| Corylus avellana | 4 | 2 | CH_cav_218 | 3 | 4 | 0.0000577115 |
| Ceratophyllum demersum | 1 | 2 | CH_cde_131 | 3 | 3 | 0.000115475 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_362 | 4 | 21 | 0.000629719 |
| Carya illinoinensis | Chr04 | 2 | CH_cil_388 | 3 | 3 | 0.000177823 |
| Daucus carota | DCARv2_Chr6 | 2 | CH_dca_263 | 3 | 3 | 0.000127065 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_632 | 4 | 10 | 0.0000265899 |
| Helianthus annuus | HanXRQChr02 | 2 | CH_han_27 | 10 | 20 | 9.93564e-19 |
| Hydrangea macrophylla | Hma1.2p1_0371F.1 | 2 | CH_hma_95 | 3 | 3 | 0.0000374669 |
| Lonicera japonica | GWHAAZE00000009 | 2 | CH_lonja_336 | 4 | 10 | 0.0000493252 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_593 | 3 | 4 | 0.000595797 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_60 | 7 | 8 | 0.00000000000000673459 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_309 | 3 | 3 | 0.0000468584 |
| Magnolia biondii | Chr12 | 2 | CH_mbi_482 | 3 | 4 | 0.000187289 |
| Malus domestica | Chr04 | 2 | CH_mdo_407 | 3 | 3 | 0.0000665583 |
| Malus domestica | Chr15 | 2 | CH_mdo_705 | 3 | 5 | 0.000664517 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_310 | 3 | 4 | 0.000121518 |
| Olea europaea | chr13 | 2 | CH_oeu_100 | 4 | 6 | 0.00000250828 |
| Olea europaea | chr19 | 2 | CH_oeu_199 | 3 | 3 | 0.000118477 |
| Olea europaea | chr14 | 2 | CH_oeu_200 | 3 | 3 | 0.000118477 |
| Oryza sativa ssp. japonica | chr04 | 2 | CH_osa_178 | 3 | 3 | 0.0000169863 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_41 | 6 | 7 | 0.00000000000196369 |
| Prunus persica | Pp05 | 2 | CH_ppe_16 | 10 | 10 | 5.6908e-25 |
| Pisum sativum | chr4LG4 | 2 | CH_psa_129 | 4 | 5 | 0.000000347147 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_240 | 3 | 3 | 0.0000619594 |
| Papaver somniferum | NW_020624376.1 | 2 | CH_pso_278 | 4 | 5 | 0.00000039937 |
| Papaver somniferum | NW_020627707.1 | 2 | CH_pso_279 | 4 | 5 | 0.00000039937 |
| Papaver somniferum | NW_020625487.1 | 2 | CH_pso_29 | 9 | 15 | 2.67241e-19 |
| Papaver somniferum | NC_039368.1 | 2 | CH_pso_3 | 17 | 25 | 1.57125e-41 |
| Papaver somniferum | NW_020618825.1 | 2 | CH_pso_447 | 3 | 3 | 0.0000835043 |
| Papaver somniferum | NC_039362.1 | 2 | CH_pso_564 | 3 | 4 | 0.000333774 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_400 | 3 | 3 | 0.000189532 |
| Quercus lobata | 1 | 2 | CH_qlo_1024 | 3 | 4 | 0.000800509 |
| Quercus lobata | 6 | 2 | CH_qlo_169 | 7 | 11 | 0.000000000000474648 |
| Quercus lobata | 9 | 2 | CH_qlo_180 | 7 | 12 | 0.00000000000113756 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_116 | 8 | 55 | 0.00000000000369205 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_471 | 3 | 4 | 0.000308045 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_138 | 7 | 48 | 0.0000000648798 |
| Salvia bowleyana | GWHASIU00000007 | 2 | CH_sbo_78 | 6 | 10 | 0.000000000131286 |
| Salix brachista | GWHAAZH00000001 | 2 | CH_sbr_310 | 3 | 3 | 0.000236532 |
| Salix brachista | GWHAAZH00000003 | 2 | CH_sbr_408 | 3 | 4 | 0.000944755 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_148 | 7 | 12 | 7.38868e-16 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_669 | 3 | 3 | 0.0000104125 |
| Schrenkiella parvula | ch2-1 | 2 | CH_spa_198 | 3 | 3 | 0.000182259 |
| Solanum pennellii | Spenn-ch03 | 2 | CH_spe_254 | 3 | 3 | 0.0000421109 |
| Solanum tuberosum | ST4.03ch10 | 2 | CH_stu_414 | 3 | 3 | 0.0000977083 |
| Solanum tuberosum | ST4.03ch08 | 2 | CH_stu_641 | 3 | 5 | 0.000975119 |
| Solanum tuberosum | ST4.03ch03 | 2 | CH_stu_96 | 5 | 5 | 0.000000000163597 |
| Trochodendron aralioides | group1 | 2 | CH_tar_297 | 3 | 3 | 0.0000935153 |
| Tarenaya hassleriana | NW_010965372.1 | 2 | CH_tha_157 | 3 | 3 | 0.000237906 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_14 | 7 | 10 | 0.0000000000000272718 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |