Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_102839_HRSCAF_103093 1 CH_ama_141 2 2 0.000862218
Capsicum annuum PGAv.1.6.scaffold641 1 CH_can_282 2 2 0.0000826105
Coffea canephora chr6 1 CH_ccan_310 2 17 0.000387551
Erythranthe guttata scaffold_10 1 CH_egut_368 2 2 0.000218444
Lonicera japonica GWHAAZE00000002 1 CH_lonja_390 2 2 0.0000598874
Papaver somniferum NC_039362.1 1 CH_pso_655 2 2 0.000630652
Papaver somniferum NC_039363.1 1 CH_pso_656 2 2 0.000630652
Papaver somniferum NC_039358.1 1 CH_pso_657 2 2 0.000630652
Solanum lycopersicum SL4.0ch10 1 CH_sly_339 2 2 0.0000586941
Solanum tuberosum ST4.03ch10 1 CH_stu_469 2 4 0.000153736
Avicennia marina ScioBoG_102839_HRSCAF_103093 2 CH_ama_141 2 2 0.000862218
Capsicum annuum PGAv.1.6.scaffold641 2 CH_can_282 2 2 0.0000826105
Coffea canephora chr6 2 CH_ccan_310 2 17 0.000387551
Erythranthe guttata scaffold_10 2 CH_egut_368 2 2 0.000218444
Lonicera japonica GWHAAZE00000002 2 CH_lonja_390 2 2 0.0000598874
Papaver somniferum NC_039362.1 2 CH_pso_655 2 2 0.000630652
Papaver somniferum NC_039363.1 2 CH_pso_656 2 2 0.000630652
Papaver somniferum NC_039358.1 2 CH_pso_657 2 2 0.000630652
Solanum lycopersicum SL4.0ch10 2 CH_sly_339 2 2 0.0000586941
Solanum tuberosum ST4.03ch10 2 CH_stu_469 2 4 0.000153736

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001