Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 1 | CH_aar_253 | 3 | 5 | 0.000745488 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 1 | CH_arhy_365 | 6 | 47 | 0.00000700171 |
| Brassica napus | A09 | 1 | CH_bna_559 | 3 | 3 | 0.000236083 |
| Brassica napus | C07 | 1 | CH_bna_560 | 3 | 3 | 0.000236083 |
| Brassica oleracea | C7 | 1 | CH_bol_24 | 7 | 10 | 0.0000000000000251247 |
| Brassica rapa | A09 | 1 | CH_bra_339 | 3 | 4 | 0.000529217 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 1 | CH_bvu_49 | 5 | 6 | 0.000000000587841 |
| Cannabis sativa | NC_044379.1 | 1 | CH_cansat_82 | 5 | 9 | 0.00000000352776 |
| Eucalyptus grandis | Chr05 | 1 | CH_egr_228 | 6 | 9 | 0.0000000000042251 |
| Glycine max | Gm15 | 1 | CH_gma_2 | 17 | 18 | 1.37513e-42 |
| Helianthus annuus | HanXRQChr09 | 1 | CH_han_216 | 5 | 11 | 0.0000000497232 |
| Hydrangea macrophylla | Hma1.2p1_0151F.1 | 1 | CH_hma_94 | 3 | 3 | 0.0000327835 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 1 | CH_lsa_321 | 3 | 3 | 0.0000422471 |
| Malus domestica | Chr06 | 1 | CH_mdo_112 | 5 | 5 | 0.000000000267709 |
| Malus domestica | Chr03 | 1 | CH_mdo_147 | 6 | 16 | 0.00000000281329 |
| Malus domestica | Chr14 | 1 | CH_mdo_258 | 4 | 5 | 0.000000993166 |
| Medicago truncatula | chr4 | 1 | CH_mtr_368 | 4 | 8 | 0.00000132792 |
| Olea europaea | chr9 | 1 | CH_oeu_148 | 4 | 12 | 0.0000516008 |
| Prunus persica | Pp05 | 1 | CH_ppe_24 | 9 | 9 | 6.06655e-22 |
| Pisum sativum | chr4LG4 | 1 | CH_psa_165 | 5 | 35 | 0.00000491898 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_191 | 3 | 3 | 0.0000244246 |
| Quercus lobata | 4 | 1 | CH_qlo_365 | 6 | 28 | 0.0000000160232 |
| Quercus lobata | 1 | 1 | CH_qlo_615 | 5 | 40 | 0.0000289864 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_48 | 10 | 37 | 3.19311e-18 |
| Simmondsia chinensis | GWHAASQ00000026 | 1 | CH_sci_127 | 3 | 3 | 0.0000650722 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_148 | 5 | 14 | 0.0000000999039 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_622 | 3 | 6 | 0.000837938 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_356 | 4 | 19 | 0.000539564 |
| Vitis vinifera | chr10 | 1 | CH_vvi_179 | 5 | 15 | 0.000000490517 |
| Aethionema arabicum | LG-11 | 2 | CH_aar_253 | 3 | 5 | 0.000745488 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 2 | CH_arhy_365 | 6 | 47 | 0.00000700171 |
| Brassica oleracea | C7 | 2 | CH_bol_24 | 7 | 10 | 0.0000000000000251247 |
| Brassica rapa | A09 | 2 | CH_bra_339 | 3 | 4 | 0.000529217 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 2 | CH_bvu_49 | 5 | 6 | 0.000000000587841 |
| Cannabis sativa | NC_044379.1 | 2 | CH_cansat_82 | 5 | 9 | 0.00000000352776 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_228 | 6 | 9 | 0.0000000000042251 |
| Glycine max | Gm15 | 2 | CH_gma_2 | 17 | 18 | 1.37513e-42 |
| Helianthus annuus | HanXRQChr09 | 2 | CH_han_216 | 5 | 11 | 0.0000000497232 |
| Hydrangea macrophylla | Hma1.2p1_0151F.1 | 2 | CH_hma_94 | 3 | 3 | 0.0000327835 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 2 | CH_lsa_321 | 3 | 3 | 0.0000422471 |
| Malus domestica | Chr06 | 2 | CH_mdo_112 | 5 | 5 | 0.000000000267709 |
| Malus domestica | Chr03 | 2 | CH_mdo_147 | 6 | 16 | 0.00000000281329 |
| Malus domestica | Chr14 | 2 | CH_mdo_258 | 4 | 5 | 0.000000993166 |
| Olea europaea | chr9 | 2 | CH_oeu_148 | 4 | 12 | 0.0000516008 |
| Prunus persica | Pp05 | 2 | CH_ppe_24 | 9 | 9 | 6.06655e-22 |
| Pisum sativum | chr4LG4 | 2 | CH_psa_165 | 5 | 35 | 0.00000491898 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_191 | 3 | 3 | 0.0000244246 |
| Quercus lobata | 4 | 2 | CH_qlo_365 | 6 | 28 | 0.0000000160232 |
| Quercus lobata | 1 | 2 | CH_qlo_615 | 5 | 40 | 0.0000289864 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_48 | 10 | 37 | 3.19311e-18 |
| Simmondsia chinensis | GWHAASQ00000026 | 2 | CH_sci_127 | 3 | 3 | 0.0000650722 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_148 | 5 | 14 | 0.0000000999039 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_622 | 3 | 6 | 0.000837938 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_356 | 4 | 19 | 0.000539564 |
| Vitis vinifera | chr10 | 2 | CH_vvi_179 | 5 | 15 | 0.000000490517 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |