Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_500 2 2 0.000422982
Actinidia chinensis Lachesis_group4 1 CH_ach_271 2 2 0.000814819
Actinidia chinensis Lachesis_group4 1 CH_ach_272 2 2 0.000814819
Brassica carinata ChrC08 1 CH_bca_1172 2 2 0.000961939
Brassica rapa A09 1 CH_bra_381 2 2 0.000901558
Coffea canephora chr6 1 CH_ccan_360 2 11 0.000715475
Fragaria x ananassa Fvb4-4 1 CH_fan_630 2 2 0.000832663
Lonicera japonica GWHAAZE00000009 1 CH_lonja_551 2 2 0.000359324
Malus domestica Chr15 1 CH_mdo_745 2 2 0.000796344
Medicago truncatula chr8 1 CH_mtr_622 2 2 0.000123259
Nicotiana tabacum Nitab4.5_0000259 1 CH_nta_107 2 2 0.000109727
Salix brachista GWHAAZH00000017 1 CH_sbr_147 3 4 0.00000200098
Sapria himalayana scaffold39_5409082 1 CH_shi_209 2 4 0.000514599
Solanum lycopersicum SL4.0ch02 1 CH_sly_484 2 2 0.000352164
Solanum tuberosum ST4.03ch02 1 CH_stu_471 2 2 0.000153736
Vigna mungo CM024074.1 1 CH_vmu_138 3 5 0.00000525878
Acer truncatum chr11 2 CH_acertr_500 2 2 0.000422982
Actinidia chinensis Lachesis_group4 2 CH_ach_271 2 2 0.000814819
Actinidia chinensis Lachesis_group4 2 CH_ach_272 2 2 0.000814819
Brassica carinata ChrC08 2 CH_bca_1172 2 2 0.000961939
Brassica rapa A09 2 CH_bra_381 2 2 0.000901558
Coffea canephora chr6 2 CH_ccan_360 2 11 0.000715475
Fragaria x ananassa Fvb4-4 2 CH_fan_630 2 2 0.000832663
Gossypium hirsutum A03 2 CH_ghi_838 2 3 0.000747644
Lonicera japonica GWHAAZE00000009 2 CH_lonja_551 2 2 0.000359324
Malus domestica Chr15 2 CH_mdo_745 2 2 0.000796344
Nicotiana tabacum Nitab4.5_0000259 2 CH_nta_107 2 2 0.000109727
Salix brachista GWHAAZH00000017 2 CH_sbr_147 3 4 0.00000200098
Sapria himalayana scaffold39_5409082 2 CH_shi_209 2 4 0.000514599
Solanum lycopersicum SL4.0ch02 2 CH_sly_484 2 2 0.000352164
Solanum tuberosum ST4.03ch02 2 CH_stu_471 2 2 0.000153736
Vigna mungo CM024074.1 2 CH_vmu_138 3 5 0.00000525878

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001