Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_202 | 3 | 3 | 0.0000265325 |
| Camellia sinensis var. sinensis | Chr10 | 1 | CH_camsi_258 | 4 | 5 | 0.0000000756861 |
| Camellia sinensis var. sinensis | Chr9 | 1 | CH_camsi_507 | 4 | 17 | 0.0000357717 |
| Cardamine hirsuta | Chr6 | 1 | CH_chi_196 | 3 | 3 | 0.0000261871 |
| Capsella rubella | scaffold_6 | 1 | CH_cru_229 | 3 | 3 | 0.0000293018 |
| Olea europaea | scaffold2090 | 1 | CH_oeu_138 | 3 | 3 | 0.0000332095 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_525 | 4 | 39 | 0.000205821 |
| Rhododendron simsii | chr03 | 1 | CH_rsi_545 | 3 | 7 | 0.000637921 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_168 | 4 | 5 | 0.000000200172 |
| Solanum pennellii | Spenn-ch03 | 1 | CH_spe_143 | 4 | 5 | 0.0000000777108 |
| Solanum tuberosum | ST4.03ch03 | 1 | CH_stu_241 | 4 | 8 | 0.00000147593 |
| Zea mays | 5 | 1 | CH_zma_139 | 3 | 3 | 0.0000387465 |
| Arabidopsis lyrata | scaffold_6 | 2 | CH_aly_202 | 3 | 3 | 0.0000265325 |
| Camellia sinensis var. sinensis | Chr10 | 2 | CH_camsi_258 | 4 | 5 | 0.0000000756861 |
| Camellia sinensis var. sinensis | Chr9 | 2 | CH_camsi_507 | 4 | 17 | 0.0000357717 |
| Cardamine hirsuta | Chr6 | 2 | CH_chi_196 | 3 | 3 | 0.0000261871 |
| Capsella rubella | scaffold_6 | 2 | CH_cru_229 | 3 | 3 | 0.0000293018 |
| Gossypium hirsutum | A11 | 2 | CH_ghi_878 | 3 | 4 | 0.000947863 |
| Olea europaea | scaffold2090 | 2 | CH_oeu_138 | 3 | 3 | 0.0000332095 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_525 | 4 | 39 | 0.000205821 |
| Rhododendron simsii | chr03 | 2 | CH_rsi_545 | 3 | 7 | 0.000637921 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_168 | 4 | 5 | 0.000000200172 |
| Solanum pennellii | Spenn-ch03 | 2 | CH_spe_143 | 4 | 5 | 0.0000000777108 |
| Solanum tuberosum | ST4.03ch03 | 2 | CH_stu_241 | 4 | 8 | 0.00000147593 |
| Zea mays | 5 | 2 | CH_zma_139 | 3 | 3 | 0.0000387465 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |