Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Carpinus fangiana Cfa05 1 CH_cfa_156 5 10 0.0000048511
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_310 6 32 0.0000875414
Gossypium raimondii Chr01 1 CH_gra_265 4 4 0.0000833742
Gossypium raimondii Chr08 1 CH_gra_384 4 5 0.000414589
Manihot esculenta Chromosome02 1 CH_mes_445 4 6 0.000545483
Sequoiadendron giganteum chr7 1 CH_sgi_1181 6 51 0.000215753
Zea mays 2 1 CH_zma_112 6 18 0.00000413652
Zea mays 5 1 CH_zma_233 5 17 0.000329139
Carpinus fangiana Cfa05 2 CH_cfa_156 5 10 0.0000048511
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_310 6 32 0.0000875414
Gossypium hirsutum A07 2 CH_ghi_805 4 5 0.000742672
Gossypium hirsutum A12 2 CH_ghi_806 4 5 0.000742672
Gossypium hirsutum D07 2 CH_ghi_807 4 5 0.000742672
Gossypium hirsutum D12 2 CH_ghi_808 4 5 0.000742672
Gossypium raimondii Chr01 2 CH_gra_265 4 4 0.0000833742
Gossypium raimondii Chr08 2 CH_gra_384 4 5 0.000414589
Manihot esculenta Chromosome02 2 CH_mes_445 4 6 0.000545483
Sequoiadendron giganteum chr7 2 CH_sgi_1181 6 51 0.000215753
Zea mays 2 2 CH_zma_112 6 18 0.00000413652
Zea mays 5 2 CH_zma_233 5 17 0.000329139

Available child term results

Ontology identifier Description Number of clusters
15.5.7.1 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF) 424
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB) 105
15.5.7.3 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2) 10
15.5.7.4 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (APD1) 3
15.5.7.5 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2-RAV) 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001