Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.transcription factor (NAC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_4 12 13 1.25141e-24
Actinidia chinensis Lachesis_group19 1 CH_ach_30 6 11 0.0000000539213
Arabidopsis lyrata scaffold_2 1 CH_aly_176 6 19 0.00000311242
Arabidopsis lyrata scaffold_1 1 CH_aly_48 6 6 0.000000000119817
Aquilegia oxysepala CHR05 1 CH_aox_310 3 3 0.000600078
Aquilegia oxysepala CHR04 1 CH_aox_311 3 3 0.000600078
Arabidopsis thaliana Chr1 1 CH_ath_126 6 22 0.0000000759115
Arabidopsis thaliana Chr1 1 CH_ath_245 4 9 0.0000548626
Brassica carinata ChrC05 1 CH_bca_14 10 13 1.57037e-17
Brassica carinata ChrB02 1 CH_bca_227 5 5 0.0000000746245
Brassica carinata ChrB01 1 CH_bca_283 6 12 0.000000255157
Brassica carinata ChrC08 1 CH_bca_374 5 7 0.00000155724
Brassica carinata ChrC03 1 CH_bca_396 7 31 0.00000257376
Brassica carinata ChrC04 1 CH_bca_516 4 4 0.0000197224
Brassica napus C05 1 CH_bna_22 9 12 0.00000000000000365769
Brassica napus A10 1 CH_bna_227 6 12 0.000000289174
Brassica napus C02 1 CH_bna_296 5 7 0.00000176809
Brassica napus A05 1 CH_bna_370 5 9 0.0000105419
Brassica oleracea C2 1 CH_bol_160 7 36 0.00000302548
Brassica oleracea C6 1 CH_bol_239 5 13 0.0000357949
Brassica oleracea C5 1 CH_bol_64 6 8 0.00000000266646
Brassica rapa A10 1 CH_bra_31 8 10 0.00000000000021712
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_249 3 3 0.000370054
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_39 7 15 0.000000000070113
Cannabis sativa NC_044377.1 1 CH_cansat_184 5 17 0.0000229498
Cannabis sativa NC_044371.1 1 CH_cansat_55 8 20 0.00000000000725591
Citrus clementina scaffold_1 1 CH_ccl_501 4 9 0.000872456
Citrus clementina scaffold_4 1 CH_ccl_64 9 27 0.0000000000293379
Carpinus fangiana Cfa02 1 CH_cfa_268 3 3 0.000139513
Carpinus fangiana Cfa04 1 CH_cfa_332 4 15 0.000312671
Cardamine hirsuta Chr1 1 CH_chi_173 4 4 0.00000455582
Cardamine hirsuta Chr8 1 CH_chi_95 5 5 0.0000000157467
Carya illinoinensis Chr04 1 CH_cil_328 6 30 0.0000414942
Carya illinoinensis Chr05 1 CH_cil_501 4 8 0.000406071
Corchorus olitorius AWUE01018151.1 1 CH_col_49 3 3 0.000124033
Carica papaya supercontig_80 1 CH_cpa_13 7 11 0.0000000000148011
Capsella rubella scaffold_1 1 CH_cru_145 5 6 0.000000171994
Capsella rubella scaffold_2 1 CH_cru_348 4 7 0.00025249
Cucumis sativus L. chr6 1 CH_csa_331 3 3 0.000995983
Daucus carota DCARv2_Chr3 1 CH_dca_457 3 3 0.000844547
Davidia involucrata GWHABJS00000001 1 CH_din_391 3 3 0.000243218
Durio zibethinus NW_019167893.1 1 CH_dzi_162 5 9 0.0000060549
Durio zibethinus NW_019168026.1 1 CH_dzi_65 6 8 0.00000000543063
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_441 3 3 0.000404859
Eucalyptus grandis Chr09 1 CH_egr_144 12 35 9.26255e-16
Eucalyptus grandis Chr01 1 CH_egr_173 8 9 0.0000000000000369064
Eucalyptus grandis Chr07 1 CH_egr_34 17 32 6.7205e-28
Eucalyptus grandis Chr10 1 CH_egr_49 13 15 5.13566e-25
Erythranthe guttata scaffold_9 1 CH_egut_216 4 4 0.00000384786
Eutrema salsugineum scaffold_8 1 CH_esa_111 7 30 0.0000013402
Fragaria x ananassa Fvb7-2 1 CH_fan_103 8 28 0.0000000155504
Fragaria x ananassa Fvb7-2 1 CH_fan_183 7 25 0.000000632682
Fragaria x ananassa Fvb7-3 1 CH_fan_293 6 20 0.0000134777
Fragaria x ananassa Fvb7-1 1 CH_fan_456 7 55 0.000241466
Fragaria x ananassa Fvb7-4 1 CH_fan_574 7 62 0.000571595
Fragaria vesca Fvb7 1 CH_fve_64 9 32 0.000000000102245
Gossypium hirsutum A10 1 CH_ghi_418 4 4 0.0000183918
Gossypium raimondii Chr04 1 CH_gra_276 6 32 0.000133354
Helianthus annuus HanXRQChr13 1 CH_han_338 4 4 0.00000400434
Hydrangea macrophylla Hma1.2p1_1241F.1 1 CH_hma_75 4 5 0.00000207916
Lonicera japonica GWHAAZE00000008 1 CH_lonja_134 7 16 0.00000000188899
Lonicera japonica GWHAAZE00000006 1 CH_lonja_284 4 4 0.00000461418
Lonicera japonica GWHAAZE00000003 1 CH_lonja_427 4 7 0.000160186
Lonicera japonica GWHAAZE00000002 1 CH_lonja_652 4 10 0.000953314
Lonicera japonica GWHAAZE00000009 1 CH_lonja_88 7 8 0.00000000000135187
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_519 3 3 0.000660458
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_520 3 3 0.000660458
Magnolia biondii Chr16 1 CH_mbi_371 5 23 0.0000668697
Magnolia biondii Chr06 1 CH_mbi_376 5 24 0.0000843163
Magnolia biondii Chr08 1 CH_mbi_572 3 3 0.000444312
Malus domestica Chr01 1 CH_mdo_2 19 30 6.36883e-36
Malus domestica Chr03 1 CH_mdo_320 4 4 0.00000589657
Malus domestica Chr14 1 CH_mdo_321 4 4 0.00000589657
Malus domestica Chr07 1 CH_mdo_37 9 14 0.00000000000000370599
Manihot esculenta Chromosome01 1 CH_mes_129 6 7 0.00000000190502
Manihot esculenta Chromosome01 1 CH_mes_174 6 11 0.000000123831
Manihot esculenta Chromosome05 1 CH_mes_20 12 13 2.30213e-23
Manihot esculenta Chromosome08 1 CH_mes_387 4 6 0.000206113
Manihot esculenta Chromosome07 1 CH_mes_67 10 27 0.00000000000119772
Marchantia polymorpha scaffold_35 1 CH_mpo_89 3 9 0.000184055
Medicago truncatula chr8 1 CH_mtr_253 5 8 0.0000000273504
Nicotiana tabacum Nitab4.5_0000016 1 CH_nta_5 9 15 0.00000000000000254894
Olea europaea scaffold203 1 CH_oeu_32 7 14 0.00000000127818
Olea europaea chr2 1 CH_oeu_54 5 5 0.0000000282757
Olea europaea chr11 1 CH_oeu_69 5 6 0.000000169129
Oryza sativa ssp. japonica chr11 1 CH_osa_145 4 4 0.00000153124
Oryza sativa ssp. japonica chr10 1 CH_osa_371 3 3 0.000616861
Oryza sativa ssp. japonica chr11 1 CH_osa_372 3 3 0.000616861
Punica granatum NC_045127.1 1 CH_pgr_109 5 6 0.00000010175
Punica granatum NC_045130.1 1 CH_pgr_9 14 37 5.5236e-21
Prunus persica Pp02 1 CH_ppe_12 15 20 3.64893e-28
Papaver somniferum NC_039362.1 1 CH_pso_52 8 12 0.00000000000000449874
Populus trichocarpa Chr14 1 CH_ptr_169 5 5 0.0000000624078
Populus trichocarpa Chr02 1 CH_ptr_326 4 5 0.0000703119
Populus trichocarpa Chr06 1 CH_ptr_468 4 7 0.00048868
Phaseolus vulgaris Chr10 1 CH_pvu_87 6 8 0.000000000956915
Quercus lobata 4 1 CH_qlo_152 8 10 0.0000000000000807212
Quercus lobata 9 1 CH_qlo_40 13 18 1.00786e-23
Quercus lobata 3 1 CH_qlo_482 9 75 0.000000675824
Quercus lobata 1 1 CH_qlo_570 4 4 0.00000882511
Quercus lobata 8 1 CH_qlo_571 4 4 0.00000882511
Quercus lobata CM012294 1 CH_qlo_594 5 11 0.0000152827
Quercus lobata CM012294 1 CH_qlo_89 13 42 2.7689e-17
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_13 17 35 8.47361e-32
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_503 5 20 0.0000438464
Rhododendron simsii chr11 1 CH_rsi_50 10 23 0.00000000000000292182
Rhododendron simsii chr02 1 CH_rsi_79 7 10 0.0000000000116481
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_203 6 6 0.000000000000200479
Sequoiadendron giganteum chr5 1 CH_sgi_204 6 6 0.000000000000200479
Sequoiadendron giganteum chr6 1 CH_sgi_240 6 7 0.00000000000140186
Sequoiadendron giganteum chr7 1 CH_sgi_529 4 4 0.000000127395
Sequoiadendron giganteum chr9 1 CH_sgi_998 3 3 0.0000986786
Solanum lycopersicum SL4.0ch02 1 CH_sly_210 7 45 0.0000015954
Selaginella moellendorffii scaffold_0 1 CH_smo_70 5 51 0.000026429
Solanum pennellii Spenn-ch02 1 CH_spe_168 6 23 0.000000403922
Solanum tuberosum ST4.03ch02 1 CH_stu_111 9 52 0.00000000104134
Solanum tuberosum ST4.03ch04 1 CH_stu_355 6 38 0.0000436757
Trochodendron aralioides group5 1 CH_tar_23 8 10 0.0000000000000643406
Theobroma cacao Chromosome_1 1 CH_tca_124 5 5 0.0000000198485
Tripterygium wilfordii NC_052248.1 1 CH_twi_10 11 12 2.1733e-21
Tripterygium wilfordii NC_052249.1 1 CH_twi_51 6 6 0.000000000180471
Vigna mungo CM024078.1 1 CH_vmu_312 4 9 0.000269465
Vitis vinifera chr19 1 CH_vvi_128 5 6 0.0000000181964
Vitis vinifera chr15 1 CH_vvi_82 6 7 0.0000000000524861
Aethionema arabicum LG-1 2 CH_aar_4 12 13 1.25141e-24
Actinidia chinensis Lachesis_group19 2 CH_ach_30 6 11 0.0000000539213
Arabidopsis lyrata scaffold_2 2 CH_aly_176 6 19 0.00000311242
Arabidopsis lyrata scaffold_1 2 CH_aly_48 6 6 0.000000000119817
Aquilegia oxysepala CHR05 2 CH_aox_310 3 3 0.000600078
Aquilegia oxysepala CHR04 2 CH_aox_311 3 3 0.000600078
Arabidopsis thaliana Chr1 2 CH_ath_126 6 22 0.0000000759115
Arabidopsis thaliana Chr1 2 CH_ath_245 4 9 0.0000548626
Brassica carinata ChrC05 2 CH_bca_14 10 13 1.57037e-17
Brassica carinata ChrB02 2 CH_bca_227 5 5 0.0000000746245
Brassica carinata ChrB01 2 CH_bca_283 6 12 0.000000255157
Brassica carinata ChrC08 2 CH_bca_374 5 7 0.00000155724
Brassica carinata ChrC03 2 CH_bca_396 7 31 0.00000257376
Brassica carinata ChrC04 2 CH_bca_516 4 4 0.0000197224
Brassica oleracea C2 2 CH_bol_160 7 36 0.00000302548
Brassica oleracea C6 2 CH_bol_239 5 13 0.0000357949
Brassica oleracea C5 2 CH_bol_64 6 8 0.00000000266646
Brassica rapa A10 2 CH_bra_31 8 10 0.00000000000021712
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_249 3 3 0.000370054
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_39 7 15 0.000000000070113
Cannabis sativa NC_044377.1 2 CH_cansat_184 5 17 0.0000229498
Cannabis sativa NC_044371.1 2 CH_cansat_55 8 20 0.00000000000725591
Citrus clementina scaffold_1 2 CH_ccl_501 4 9 0.000872456
Citrus clementina scaffold_4 2 CH_ccl_64 9 27 0.0000000000293379
Carpinus fangiana Cfa02 2 CH_cfa_268 3 3 0.000139513
Carpinus fangiana Cfa04 2 CH_cfa_332 4 15 0.000312671
Cardamine hirsuta Chr1 2 CH_chi_173 4 4 0.00000455582
Cardamine hirsuta Chr8 2 CH_chi_95 5 5 0.0000000157467
Carya illinoinensis Chr04 2 CH_cil_328 6 30 0.0000414942
Carya illinoinensis Chr05 2 CH_cil_501 4 8 0.000406071
Corchorus olitorius AWUE01018151.1 2 CH_col_49 3 3 0.000124033
Carica papaya supercontig_80 2 CH_cpa_13 7 11 0.0000000000148011
Capsella rubella scaffold_1 2 CH_cru_145 5 6 0.000000171994
Capsella rubella scaffold_2 2 CH_cru_348 4 7 0.00025249
Cucumis sativus L. chr6 2 CH_csa_331 3 3 0.000995983
Daucus carota DCARv2_Chr3 2 CH_dca_457 3 3 0.000844547
Davidia involucrata GWHABJS00000001 2 CH_din_391 3 3 0.000243218
Durio zibethinus NW_019167893.1 2 CH_dzi_162 5 9 0.0000060549
Durio zibethinus NW_019168026.1 2 CH_dzi_65 6 8 0.00000000543063
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_441 3 3 0.000404859
Eucalyptus grandis Chr09 2 CH_egr_144 12 35 9.26255e-16
Eucalyptus grandis Chr01 2 CH_egr_173 8 9 0.0000000000000369064
Eucalyptus grandis Chr07 2 CH_egr_34 17 32 6.7205e-28
Eucalyptus grandis Chr01 2 CH_egr_424 5 5 0.0000000538553
Eucalyptus grandis Chr06 2 CH_egr_425 5 5 0.0000000538553
Eucalyptus grandis Chr10 2 CH_egr_49 13 15 5.13566e-25
Eucalyptus grandis Chr04 2 CH_egr_710 4 5 0.0000623739
Erythranthe guttata scaffold_9 2 CH_egut_216 4 4 0.00000384786
Eutrema salsugineum scaffold_8 2 CH_esa_111 7 30 0.0000013402
Fragaria x ananassa Fvb7-2 2 CH_fan_103 8 28 0.0000000155504
Fragaria x ananassa Fvb7-2 2 CH_fan_183 7 25 0.000000632682
Fragaria x ananassa Fvb7-3 2 CH_fan_293 6 20 0.0000134777
Fragaria x ananassa Fvb7-1 2 CH_fan_456 7 55 0.000241466
Fragaria x ananassa Fvb7-4 2 CH_fan_574 7 62 0.000571595
Fragaria vesca Fvb7 2 CH_fve_64 9 32 0.000000000102245
Gossypium hirsutum A10 2 CH_ghi_418 4 4 0.0000183918
Gossypium hirsutum D08 2 CH_ghi_645 6 33 0.000285683
Gossypium hirsutum A08 2 CH_ghi_655 6 34 0.000345739
Gossypium raimondii Chr04 2 CH_gra_276 6 32 0.000133354
Helianthus annuus HanXRQChr13 2 CH_han_338 4 4 0.00000400434
Hydrangea macrophylla Hma1.2p1_1241F.1 2 CH_hma_75 4 5 0.00000207916
Lonicera japonica GWHAAZE00000008 2 CH_lonja_134 7 16 0.00000000188899
Lonicera japonica GWHAAZE00000006 2 CH_lonja_284 4 4 0.00000461418
Lonicera japonica GWHAAZE00000003 2 CH_lonja_427 4 7 0.000160186
Lonicera japonica GWHAAZE00000002 2 CH_lonja_652 4 10 0.000953314
Lonicera japonica GWHAAZE00000009 2 CH_lonja_88 7 8 0.00000000000135187
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_519 3 3 0.000660458
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_520 3 3 0.000660458
Magnolia biondii Chr16 2 CH_mbi_371 5 23 0.0000668697
Magnolia biondii Chr06 2 CH_mbi_376 5 24 0.0000843163
Magnolia biondii Chr08 2 CH_mbi_572 3 3 0.000444312
Malus domestica Chr01 2 CH_mdo_2 19 30 6.36883e-36
Malus domestica Chr03 2 CH_mdo_320 4 4 0.00000589657
Malus domestica Chr14 2 CH_mdo_321 4 4 0.00000589657
Malus domestica Chr07 2 CH_mdo_37 9 14 0.00000000000000370599
Manihot esculenta Chromosome01 2 CH_mes_129 6 7 0.00000000190502
Manihot esculenta Chromosome01 2 CH_mes_174 6 11 0.000000123831
Manihot esculenta Chromosome05 2 CH_mes_20 12 13 2.30213e-23
Manihot esculenta Chromosome08 2 CH_mes_387 4 6 0.000206113
Manihot esculenta Chromosome07 2 CH_mes_67 10 27 0.00000000000119772
Marchantia polymorpha scaffold_35 2 CH_mpo_89 3 9 0.000184055
Nicotiana tabacum Nitab4.5_0000016 2 CH_nta_5 9 15 0.00000000000000254894
Olea europaea scaffold203 2 CH_oeu_32 7 14 0.00000000127818
Olea europaea chr2 2 CH_oeu_54 5 5 0.0000000282757
Olea europaea chr11 2 CH_oeu_69 5 6 0.000000169129
Oryza sativa ssp. japonica chr11 2 CH_osa_145 4 4 0.00000153124
Oryza sativa ssp. japonica chr10 2 CH_osa_371 3 3 0.000616861
Oryza sativa ssp. japonica chr11 2 CH_osa_372 3 3 0.000616861
Punica granatum NC_045127.1 2 CH_pgr_109 5 6 0.00000010175
Punica granatum NC_045130.1 2 CH_pgr_9 14 37 5.5236e-21
Prunus persica Pp02 2 CH_ppe_12 15 20 3.64893e-28
Papaver somniferum NC_039362.1 2 CH_pso_52 8 12 0.00000000000000449874
Populus trichocarpa Chr14 2 CH_ptr_169 5 5 0.0000000624078
Populus trichocarpa Chr02 2 CH_ptr_326 4 5 0.0000703119
Populus trichocarpa Chr06 2 CH_ptr_468 4 7 0.00048868
Phaseolus vulgaris Chr10 2 CH_pvu_87 6 8 0.000000000956915
Quercus lobata 4 2 CH_qlo_152 8 10 0.0000000000000807212
Quercus lobata 9 2 CH_qlo_40 13 18 1.00786e-23
Quercus lobata 3 2 CH_qlo_482 9 75 0.000000675824
Quercus lobata 1 2 CH_qlo_570 4 4 0.00000882511
Quercus lobata 8 2 CH_qlo_571 4 4 0.00000882511
Quercus lobata CM012294 2 CH_qlo_594 5 11 0.0000152827
Quercus lobata CM012294 2 CH_qlo_89 13 42 2.7689e-17
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_13 17 35 8.47361e-32
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_503 5 20 0.0000438464
Rhododendron simsii chr11 2 CH_rsi_50 10 23 0.00000000000000292182
Rhododendron simsii chr02 2 CH_rsi_79 7 10 0.0000000000116481
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_203 6 6 0.000000000000200479
Sequoiadendron giganteum chr5 2 CH_sgi_204 6 6 0.000000000000200479
Sequoiadendron giganteum chr6 2 CH_sgi_240 6 7 0.00000000000140186
Sequoiadendron giganteum chr7 2 CH_sgi_529 4 4 0.000000127395
Sequoiadendron giganteum chr9 2 CH_sgi_998 3 3 0.0000986786
Solanum lycopersicum SL4.0ch02 2 CH_sly_210 7 45 0.0000015954
Selaginella moellendorffii scaffold_0 2 CH_smo_70 5 51 0.000026429
Solanum pennellii Spenn-ch02 2 CH_spe_168 6 23 0.000000403922
Solanum tuberosum ST4.03ch02 2 CH_stu_111 9 52 0.00000000104134
Solanum tuberosum ST4.03ch04 2 CH_stu_355 6 38 0.0000436757
Trochodendron aralioides group5 2 CH_tar_23 8 10 0.0000000000000643406
Theobroma cacao Chromosome_1 2 CH_tca_124 5 5 0.0000000198485
Tripterygium wilfordii NC_052248.1 2 CH_twi_10 11 12 2.1733e-21
Tripterygium wilfordii NC_052249.1 2 CH_twi_51 6 6 0.000000000180471
Vigna mungo CM024078.1 2 CH_vmu_312 4 9 0.000269465
Vitis vinifera chr19 2 CH_vvi_128 5 6 0.0000000181964
Vitis vinifera chr15 2 CH_vvi_82 6 7 0.0000000000524861

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001