Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcriptional repression
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr14 | 1 | CH_camsi_497 | 4 | 15 | 0.0000289395 |
| Eutrema salsugineum | scaffold_2 | 1 | CH_esa_207 | 3 | 4 | 0.00014115 |
| Magnolia biondii | Chr06 | 1 | CH_mbi_361 | 4 | 21 | 0.0000558646 |
| Simmondsia chinensis | GWHAASQ00000008 | 1 | CH_sci_288 | 5 | 79 | 0.000819425 |
| Selenicereus undatus | Scaffold_33676 | 1 | CH_sun_95 | 5 | 50 | 0.0000282787 |
| Camellia sinensis var. sinensis | Chr14 | 2 | CH_camsi_497 | 4 | 15 | 0.0000289395 |
| Eutrema salsugineum | scaffold_2 | 2 | CH_esa_207 | 3 | 4 | 0.00014115 |
| Magnolia biondii | Chr06 | 2 | CH_mbi_361 | 4 | 21 | 0.0000558646 |
| Simmondsia chinensis | GWHAASQ00000008 | 2 | CH_sci_288 | 5 | 79 | 0.000819425 |
| Selenicereus undatus | Scaffold_33676 | 2 | CH_sun_95 | 5 | 50 | 0.0000282787 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 15.5.51.2 | RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (ECAP) | 8 |
| 15.5.51.3 | RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (AFP/NINJA) | 16 |
| 15.5.51.4 | RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (TIE/SPL) | 10 |
| 15.5.51.5 | RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (NF-X1) | 12 |
| 15.5.51.6.1 | RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.component LUG/LUH | 33 |
| 15.5.51.6.2 | RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.adapter component SEU/SLK | 38 |
| 15.5.51.7.1 | RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component PEAPOD | 8 |
| 15.5.51.7.2 | RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component KIX | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |