Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (AS2/LOB)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 1 | CH_arhy_235 | 5 | 12 | 0.000000146304 |
| Brassica carinata | ChrB02 | 1 | CH_bca_830 | 3 | 3 | 0.000245221 |
| Brassica napus | C07 | 1 | CH_bna_126 | 5 | 6 | 0.00000000304488 |
| Brassica napus | A07 | 1 | CH_bna_236 | 4 | 4 | 0.000000377726 |
| Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_396 | 4 | 7 | 0.0000029565 |
| Camellia sinensis var. sinensis | Chr13 | 1 | CH_camsi_496 | 4 | 11 | 0.000027773 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_267 | 3 | 4 | 0.000184567 |
| Corylus avellana | 11 | 1 | CH_cav_186 | 4 | 10 | 0.00000888847 |
| Coffea canephora | chr9 | 1 | CH_ccan_294 | 3 | 24 | 0.000272859 |
| Citrus clementina | scaffold_4 | 1 | CH_ccl_273 | 3 | 3 | 0.0000784309 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_79 | 5 | 9 | 0.00000000441677 |
| Capsella rubella | scaffold_5 | 1 | CH_cru_289 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_41 | 6 | 8 | 0.000000000011946 |
| Erythranthe guttata | scaffold_11 | 1 | CH_egut_196 | 4 | 4 | 0.000000689965 |
| Erythranthe guttata | scaffold_10 | 1 | CH_egut_3 | 14 | 14 | 6.45386e-34 |
| Erythranthe guttata | scaffold_5 | 1 | CH_egut_401 | 3 | 3 | 0.000315831 |
| Eutrema salsugineum | scaffold_15 | 1 | CH_esa_1 | 15 | 15 | 2.87007e-37 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_313 | 3 | 4 | 0.000136187 |
| Gossypium raimondii | Chr04 | 1 | CH_gra_326 | 3 | 3 | 0.000216064 |
| Lonicera japonica | GWHAAZE00000007 | 1 | CH_lonja_500 | 4 | 17 | 0.000186917 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_419 | 3 | 4 | 0.00022476 |
| Malus domestica | Chr05 | 1 | CH_mdo_421 | 3 | 3 | 0.000113017 |
| Manihot esculenta | Chromosome07 | 1 | CH_mes_334 | 3 | 3 | 0.000155044 |
| Petunia axillaris | Peaxi162Scf00047 | 1 | CH_pax_325 | 3 | 4 | 0.000513073 |
| Prunus persica | Pp08 | 1 | CH_ppe_363 | 3 | 3 | 0.000095826 |
| Papaver somniferum | NW_020619603.1 | 1 | CH_pso_112 | 5 | 5 | 0.0000000000270074 |
| Papaver somniferum | NC_039368.1 | 1 | CH_pso_246 | 5 | 16 | 0.000000117141 |
| Papaver somniferum | NC_039367.1 | 1 | CH_pso_713 | 3 | 6 | 0.000906052 |
| Quercus lobata | 6 | 1 | CH_qlo_718 | 3 | 3 | 0.000078369 |
| Quercus lobata | 5 | 1 | CH_qlo_93 | 9 | 21 | 5.21199e-17 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_437 | 3 | 3 | 0.0000201106 |
| Rhododendron simsii | chr06 | 1 | CH_rsi_107 | 5 | 5 | 0.000000000275609 |
| Salvia bowleyana | GWHASIU00000001 | 1 | CH_sbo_490 | 3 | 5 | 0.00095629 |
| Salix brachista | GWHAAZH00000007 | 1 | CH_sbr_249 | 3 | 3 | 0.00012404 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_177 | 8 | 10 | 0.0000000000000149179 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_25 | 15 | 19 | 2.19869e-30 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_326 | 6 | 7 | 0.000000000257078 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_347 | 6 | 8 | 0.00000000102562 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_371 | 6 | 9 | 0.00000000306883 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_518 | 5 | 6 | 0.0000000723692 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_686 | 4 | 5 | 0.0000196504 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_7 | 20 | 29 | 8.87551e-40 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_73 | 12 | 16 | 4.45652e-23 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_374 | 3 | 3 | 0.000121057 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_59 | 6 | 6 | 0.000000000000359919 |
| Trochodendron aralioides | group4 | 1 | CH_tar_88 | 5 | 7 | 0.00000000710125 |
| Utricularia gibba | unitig_52 | 1 | CH_ugi_11 | 5 | 5 | 0.000000000210274 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_195 | 3 | 3 | 0.0000473298 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_196 | 3 | 3 | 0.0000473298 |
| Vitis vinifera | chr13 | 1 | CH_vvi_24 | 9 | 10 | 1.12574e-20 |
| Vitis vinifera | chr7 | 1 | CH_vvi_299 | 3 | 3 | 0.000114941 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 2 | CH_arhy_235 | 5 | 12 | 0.000000146304 |
| Brassica carinata | ChrB02 | 2 | CH_bca_830 | 3 | 3 | 0.000245221 |
| Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_396 | 4 | 7 | 0.0000029565 |
| Camellia sinensis var. sinensis | Chr13 | 2 | CH_camsi_496 | 4 | 11 | 0.000027773 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_267 | 3 | 4 | 0.000184567 |
| Corylus avellana | 11 | 2 | CH_cav_186 | 4 | 10 | 0.00000888847 |
| Coffea canephora | chr9 | 2 | CH_ccan_294 | 3 | 24 | 0.000272859 |
| Citrus clementina | scaffold_4 | 2 | CH_ccl_273 | 3 | 3 | 0.0000784309 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_79 | 5 | 9 | 0.00000000441677 |
| Capsella rubella | scaffold_5 | 2 | CH_cru_289 | 3 | 3 | 0.000113791 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_41 | 6 | 8 | 0.000000000011946 |
| Erythranthe guttata | scaffold_11 | 2 | CH_egut_196 | 4 | 4 | 0.000000689965 |
| Erythranthe guttata | scaffold_10 | 2 | CH_egut_3 | 14 | 14 | 6.45386e-34 |
| Erythranthe guttata | scaffold_5 | 2 | CH_egut_401 | 3 | 3 | 0.000315831 |
| Eutrema salsugineum | scaffold_15 | 2 | CH_esa_1 | 15 | 15 | 2.87007e-37 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_313 | 3 | 4 | 0.000136187 |
| Gossypium hirsutum | A08 | 2 | CH_ghi_732 | 3 | 3 | 0.000409936 |
| Gossypium hirsutum | D08 | 2 | CH_ghi_733 | 3 | 3 | 0.000409936 |
| Gossypium raimondii | Chr04 | 2 | CH_gra_326 | 3 | 3 | 0.000216064 |
| Lonicera japonica | GWHAAZE00000007 | 2 | CH_lonja_500 | 4 | 17 | 0.000186917 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_419 | 3 | 4 | 0.00022476 |
| Malus domestica | Chr05 | 2 | CH_mdo_421 | 3 | 3 | 0.000113017 |
| Manihot esculenta | Chromosome07 | 2 | CH_mes_334 | 3 | 3 | 0.000155044 |
| Petunia axillaris | Peaxi162Scf00047 | 2 | CH_pax_325 | 3 | 4 | 0.000513073 |
| Prunus persica | Pp08 | 2 | CH_ppe_363 | 3 | 3 | 0.000095826 |
| Papaver somniferum | NW_020619603.1 | 2 | CH_pso_112 | 5 | 5 | 0.0000000000270074 |
| Papaver somniferum | NC_039368.1 | 2 | CH_pso_246 | 5 | 16 | 0.000000117141 |
| Papaver somniferum | NC_039367.1 | 2 | CH_pso_713 | 3 | 6 | 0.000906052 |
| Quercus lobata | 6 | 2 | CH_qlo_718 | 3 | 3 | 0.000078369 |
| Quercus lobata | 5 | 2 | CH_qlo_93 | 9 | 21 | 5.21199e-17 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_437 | 3 | 3 | 0.0000201106 |
| Rhododendron simsii | chr06 | 2 | CH_rsi_107 | 5 | 5 | 0.000000000275609 |
| Salvia bowleyana | GWHASIU00000001 | 2 | CH_sbo_490 | 3 | 5 | 0.00095629 |
| Salix brachista | GWHAAZH00000007 | 2 | CH_sbr_249 | 3 | 3 | 0.00012404 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_177 | 8 | 10 | 0.0000000000000149179 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_25 | 15 | 19 | 2.19869e-30 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_326 | 6 | 7 | 0.000000000257078 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_347 | 6 | 8 | 0.00000000102562 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_371 | 6 | 9 | 0.00000000306883 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_518 | 5 | 6 | 0.0000000723692 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_686 | 4 | 5 | 0.0000196504 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_7 | 20 | 29 | 8.87551e-40 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_73 | 12 | 16 | 4.45652e-23 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_374 | 3 | 3 | 0.000121057 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_59 | 6 | 6 | 0.000000000000359919 |
| Trochodendron aralioides | group4 | 2 | CH_tar_88 | 5 | 7 | 0.00000000710125 |
| Utricularia gibba | unitig_52 | 2 | CH_ugi_11 | 5 | 5 | 0.000000000210274 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_195 | 3 | 3 | 0.0000473298 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_196 | 3 | 3 | 0.0000473298 |
| Vitis vinifera | chr13 | 2 | CH_vvi_24 | 9 | 10 | 1.12574e-20 |
| Vitis vinifera | chr7 | 2 | CH_vvi_299 | 3 | 3 | 0.000114941 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |