Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 1 | CH_acertr_199 | 4 | 4 | 0.00000584801 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 1 | CH_arhy_443 | 5 | 14 | 0.0000630596 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 1 | CH_atr_128 | 4 | 5 | 0.0000027577 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_687 | 4 | 7 | 0.000192746 |
| Cannabis sativa | NC_044372.1 | 1 | CH_cansat_351 | 5 | 24 | 0.000424495 |
| Coffea canephora | chr5 | 1 | CH_ccan_115 | 4 | 22 | 0.0000032703 |
| Coffea canephora | chr8 | 1 | CH_ccan_274 | 4 | 55 | 0.000228971 |
| Carya illinoinensis | Chr03 | 1 | CH_cil_282 | 6 | 13 | 0.00000434421 |
| Carya illinoinensis | Chr12 | 1 | CH_cil_334 | 4 | 4 | 0.0000618489 |
| Carya illinoinensis | Chr12 | 1 | CH_cil_335 | 4 | 4 | 0.0000618489 |
| Carya illinoinensis | Chr02 | 1 | CH_cil_455 | 4 | 5 | 0.000307617 |
| Carya illinoinensis | Chr10 | 1 | CH_cil_64 | 10 | 14 | 0.00000000000000440645 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2715 | 1 | CH_cqu_515 | 3 | 3 | 0.000578231 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2947 | 1 | CH_cqu_516 | 3 | 3 | 0.000578231 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_188 | 5 | 7 | 0.00000186166 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_328 | 4 | 6 | 0.000228516 |
| Daucus carota | DCARv2_Chr3 | 1 | CH_dca_393 | 4 | 7 | 0.000531216 |
| Durio zibethinus | NW_019167838.1 | 1 | CH_dzi_24 | 8 | 8 | 0.0000000000000652023 |
| Eucalyptus grandis | Chr10 | 1 | CH_egr_187 | 10 | 22 | 0.0000000000000801046 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_164 | 6 | 12 | 0.000000137329 |
| Erythranthe guttata | scaffold_8 | 1 | CH_egut_329 | 4 | 6 | 0.000132437 |
| Fragaria x ananassa | Fvb2-3 | 1 | CH_fan_147 | 6 | 11 | 0.000000151797 |
| Fragaria x ananassa | Fvb2-1 | 1 | CH_fan_96 | 6 | 8 | 0.00000000929014 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_93 | 6 | 9 | 0.00000000318307 |
| Glycine max | Gm06 | 1 | CH_gma_102 | 7 | 10 | 0.00000000112625 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_147 | 6 | 6 | 0.000000000241023 |
| Helianthus annuus | HanXRQChr17 | 1 | CH_han_298 | 5 | 7 | 0.00000124484 |
| Lotus japonicus | chr3 | 1 | CH_lja_50 | 7 | 8 | 0.000000000017538 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_120 | 6 | 7 | 0.000000000595875 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_308 | 5 | 13 | 0.0000274494 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_490 | 5 | 27 | 0.00028217 |
| Manihot esculenta | Chromosome17 | 1 | CH_mes_511 | 4 | 7 | 0.000976097 |
| Medicago truncatula | chr5 | 1 | CH_mtr_168 | 8 | 23 | 0.000000000212488 |
| Medicago truncatula | chr8 | 1 | CH_mtr_305 | 6 | 15 | 0.000000233831 |
| Nelumbo nucifera | chr4 | 1 | CH_nnu_74 | 5 | 5 | 0.00000000975764 |
| Nicotiana tabacum | Nitab4.5_0000103 | 1 | CH_nta_82 | 4 | 6 | 0.0000453186 |
| Petunia axillaris | Peaxi162Scf00007 | 1 | CH_pax_139 | 4 | 4 | 0.00000426614 |
| Punica granatum | NC_045132.1 | 1 | CH_pgr_176 | 4 | 4 | 0.0000199987 |
| Punica granatum | NC_045134.1 | 1 | CH_pgr_31 | 8 | 10 | 0.000000000000596022 |
| Prunus persica | Pp01 | 1 | CH_ppe_231 | 5 | 8 | 0.0000019758 |
| Prunus persica | Pp07 | 1 | CH_ppe_262 | 4 | 4 | 0.00000861011 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_551 | 4 | 9 | 0.000244985 |
| Populus trichocarpa | Chr17 | 1 | CH_ptr_284 | 4 | 4 | 0.0000345449 |
| Phaseolus vulgaris | Chr11 | 1 | CH_pvu_239 | 4 | 4 | 0.000030508 |
| Phaseolus vulgaris | Chr03 | 1 | CH_pvu_69 | 7 | 8 | 0.000000000043993 |
| Quercus lobata | 5 | 1 | CH_qlo_275 | 7 | 12 | 0.000000000766066 |
| Quercus lobata | CM012294 | 1 | CH_qlo_331 | 6 | 8 | 0.00000000654774 |
| Quercus lobata | CM012294 | 1 | CH_qlo_591 | 4 | 4 | 0.0000132203 |
| Quercus lobata | CM012294 | 1 | CH_qlo_610 | 5 | 11 | 0.0000253164 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_113 | 8 | 18 | 0.00000000000271328 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_642 | 4 | 9 | 0.00023737 |
| Rhododendron simsii | chr04 | 1 | CH_rsi_302 | 4 | 5 | 0.0000232083 |
| Rhododendron simsii | chr06 | 1 | CH_rsi_371 | 4 | 6 | 0.0000694322 |
| Rhododendron simsii | chr12 | 1 | CH_rsi_94 | 7 | 11 | 0.0000000000590448 |
| Salvia bowleyana | GWHASIU00000008 | 1 | CH_sbo_303 | 4 | 7 | 0.0000728649 |
| Salix brachista | GWHAAZH00000019 | 1 | CH_sbr_211 | 5 | 11 | 0.000062949 |
| Sechium edule | LG05 | 1 | CH_sed_229 | 4 | 5 | 0.0000958406 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_1172 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_1173 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_1174 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_1175 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_13 | 19 | 23 | 2.32063e-35 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_171 | 9 | 11 | 0.00000000000000958299 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_184 | 8 | 8 | 0.0000000000000328254 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_259 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_260 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_269 | 8 | 11 | 0.00000000000533875 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_280 | 8 | 12 | 0.0000000000159396 |
| Sequoiadendron giganteum | HRSCAF_1 | 1 | CH_sgi_294 | 8 | 13 | 0.0000000000412445 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_319 | 8 | 15 | 0.000000000204253 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_426 | 8 | 20 | 0.00000000390361 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_428 | 7 | 12 | 0.00000000471563 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_704 | 4 | 4 | 0.0000380352 |
| Solanum lycopersicum | SL4.0ch10 | 1 | CH_sly_277 | 4 | 5 | 0.0000332955 |
| Solanum pennellii | Spenn-ch10 | 1 | CH_spe_219 | 4 | 5 | 0.00000879101 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_311 | 4 | 7 | 0.0000612937 |
| Solanum pennellii | Spenn-ch03 | 1 | CH_spe_517 | 3 | 3 | 0.000713611 |
| Solanum tuberosum | ST4.03ch12 | 1 | CH_stu_640 | 3 | 3 | 0.00094724 |
| Solanum tuberosum | ST4.03ch07 | 1 | CH_stu_94 | 6 | 7 | 0.000000000148125 |
| Selenicereus undatus | Scaffold_3410 | 1 | CH_sun_221 | 3 | 3 | 0.000314525 |
| Theobroma cacao | Chromosome_9 | 1 | CH_tca_202 | 5 | 7 | 0.000000857676 |
| Theobroma cacao | Chromosome_2 | 1 | CH_tca_310 | 4 | 6 | 0.000144237 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 1 | CH_tpr_265 | 4 | 6 | 0.0000857849 |
| Vigna mungo | CM024076.1 | 1 | CH_vmu_51 | 8 | 24 | 0.00000000147398 |
| Vitis vinifera | chr4 | 1 | CH_vvi_122 | 6 | 8 | 0.0000000114211 |
| Vitis vinifera | chr2 | 1 | CH_vvi_74 | 7 | 8 | 0.0000000000159546 |
| Zea mays | 1 | 1 | CH_zma_9 | 9 | 9 | 1.74608e-17 |
| Acer truncatum | chr7 | 2 | CH_acertr_199 | 4 | 4 | 0.00000584801 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 2 | CH_arhy_443 | 5 | 14 | 0.0000630596 |
| Amborella trichopoda | AmTr_v1.0_scaffold00024 | 2 | CH_atr_128 | 4 | 5 | 0.0000027577 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_687 | 4 | 7 | 0.000192746 |
| Cannabis sativa | NC_044372.1 | 2 | CH_cansat_351 | 5 | 24 | 0.000424495 |
| Coffea canephora | chr5 | 2 | CH_ccan_115 | 4 | 22 | 0.0000032703 |
| Coffea canephora | chr8 | 2 | CH_ccan_274 | 4 | 55 | 0.000228971 |
| Carya illinoinensis | Chr03 | 2 | CH_cil_282 | 6 | 13 | 0.00000434421 |
| Carya illinoinensis | Chr12 | 2 | CH_cil_334 | 4 | 4 | 0.0000618489 |
| Carya illinoinensis | Chr12 | 2 | CH_cil_335 | 4 | 4 | 0.0000618489 |
| Carya illinoinensis | Chr02 | 2 | CH_cil_455 | 4 | 5 | 0.000307617 |
| Carya illinoinensis | Chr10 | 2 | CH_cil_64 | 10 | 14 | 0.00000000000000440645 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2715 | 2 | CH_cqu_515 | 3 | 3 | 0.000578231 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2947 | 2 | CH_cqu_516 | 3 | 3 | 0.000578231 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_188 | 5 | 7 | 0.00000186166 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_328 | 4 | 6 | 0.000228516 |
| Daucus carota | DCARv2_Chr3 | 2 | CH_dca_393 | 4 | 7 | 0.000531216 |
| Durio zibethinus | NW_019167838.1 | 2 | CH_dzi_24 | 8 | 8 | 0.0000000000000652023 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_187 | 10 | 22 | 0.0000000000000801046 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_431 | 5 | 5 | 0.0000000722093 |
| Eucalyptus grandis | Chr04 | 2 | CH_egr_527 | 5 | 7 | 0.00000150486 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_164 | 6 | 12 | 0.000000137329 |
| Erythranthe guttata | scaffold_8 | 2 | CH_egut_329 | 4 | 6 | 0.000132437 |
| Fragaria x ananassa | Fvb2-3 | 2 | CH_fan_147 | 6 | 11 | 0.000000151797 |
| Fragaria x ananassa | Fvb2-1 | 2 | CH_fan_96 | 6 | 8 | 0.00000000929014 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_93 | 6 | 9 | 0.00000000318307 |
| Glycine max | Gm06 | 2 | CH_gma_102 | 7 | 10 | 0.00000000112625 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_147 | 6 | 6 | 0.000000000241023 |
| Helianthus annuus | HanXRQChr17 | 2 | CH_han_298 | 5 | 7 | 0.00000124484 |
| Lotus japonicus | chr3 | 2 | CH_lja_50 | 7 | 8 | 0.000000000017538 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_120 | 6 | 7 | 0.000000000595875 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_308 | 5 | 13 | 0.0000274494 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_490 | 5 | 27 | 0.00028217 |
| Manihot esculenta | Chromosome17 | 2 | CH_mes_511 | 4 | 7 | 0.000976097 |
| Nelumbo nucifera | chr4 | 2 | CH_nnu_74 | 5 | 5 | 0.00000000975764 |
| Nicotiana tabacum | Nitab4.5_0000103 | 2 | CH_nta_82 | 4 | 6 | 0.0000453186 |
| Petunia axillaris | Peaxi162Scf00007 | 2 | CH_pax_139 | 4 | 4 | 0.00000426614 |
| Punica granatum | NC_045132.1 | 2 | CH_pgr_176 | 4 | 4 | 0.0000199987 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_31 | 8 | 10 | 0.000000000000596022 |
| Prunus persica | Pp01 | 2 | CH_ppe_231 | 5 | 8 | 0.0000019758 |
| Prunus persica | Pp07 | 2 | CH_ppe_262 | 4 | 4 | 0.00000861011 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_551 | 4 | 9 | 0.000244985 |
| Populus trichocarpa | Chr17 | 2 | CH_ptr_284 | 4 | 4 | 0.0000345449 |
| Phaseolus vulgaris | Chr11 | 2 | CH_pvu_239 | 4 | 4 | 0.000030508 |
| Phaseolus vulgaris | Chr03 | 2 | CH_pvu_69 | 7 | 8 | 0.000000000043993 |
| Quercus lobata | 5 | 2 | CH_qlo_275 | 7 | 12 | 0.000000000766066 |
| Quercus lobata | CM012294 | 2 | CH_qlo_331 | 6 | 8 | 0.00000000654774 |
| Quercus lobata | CM012294 | 2 | CH_qlo_591 | 4 | 4 | 0.0000132203 |
| Quercus lobata | CM012294 | 2 | CH_qlo_610 | 5 | 11 | 0.0000253164 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_113 | 8 | 18 | 0.00000000000271328 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_642 | 4 | 9 | 0.00023737 |
| Rhododendron simsii | chr04 | 2 | CH_rsi_302 | 4 | 5 | 0.0000232083 |
| Rhododendron simsii | chr06 | 2 | CH_rsi_371 | 4 | 6 | 0.0000694322 |
| Rhododendron simsii | chr12 | 2 | CH_rsi_94 | 7 | 11 | 0.0000000000590448 |
| Salvia bowleyana | GWHASIU00000008 | 2 | CH_sbo_303 | 4 | 7 | 0.0000728649 |
| Salix brachista | GWHAAZH00000019 | 2 | CH_sbr_211 | 5 | 11 | 0.000062949 |
| Sechium edule | LG05 | 2 | CH_sed_229 | 4 | 5 | 0.0000958406 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_1172 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_1173 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_1174 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_1175 | 4 | 5 | 0.000189341 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_13 | 19 | 23 | 2.32063e-35 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_171 | 9 | 11 | 0.00000000000000958299 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_184 | 8 | 8 | 0.0000000000000328254 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_259 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_260 | 9 | 17 | 0.00000000000411451 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_269 | 8 | 11 | 0.00000000000533875 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_280 | 8 | 12 | 0.0000000000159396 |
| Sequoiadendron giganteum | HRSCAF_1 | 2 | CH_sgi_294 | 8 | 13 | 0.0000000000412445 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_319 | 8 | 15 | 0.000000000204253 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_426 | 8 | 20 | 0.00000000390361 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_428 | 7 | 12 | 0.00000000471563 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_704 | 4 | 4 | 0.0000380352 |
| Solanum lycopersicum | SL4.0ch10 | 2 | CH_sly_277 | 4 | 5 | 0.0000332955 |
| Solanum pennellii | Spenn-ch10 | 2 | CH_spe_219 | 4 | 5 | 0.00000879101 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_311 | 4 | 7 | 0.0000612937 |
| Solanum pennellii | Spenn-ch03 | 2 | CH_spe_517 | 3 | 3 | 0.000713611 |
| Solanum tuberosum | ST4.03ch12 | 2 | CH_stu_640 | 3 | 3 | 0.00094724 |
| Solanum tuberosum | ST4.03ch07 | 2 | CH_stu_94 | 6 | 7 | 0.000000000148125 |
| Selenicereus undatus | Scaffold_3410 | 2 | CH_sun_221 | 3 | 3 | 0.000314525 |
| Theobroma cacao | Chromosome_9 | 2 | CH_tca_202 | 5 | 7 | 0.000000857676 |
| Theobroma cacao | Chromosome_2 | 2 | CH_tca_310 | 4 | 6 | 0.000144237 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 2 | CH_tpr_265 | 4 | 6 | 0.0000857849 |
| Vigna mungo | CM024076.1 | 2 | CH_vmu_51 | 8 | 24 | 0.00000000147398 |
| Vitis vinifera | chr4 | 2 | CH_vvi_122 | 6 | 8 | 0.0000000114211 |
| Vitis vinifera | chr2 | 2 | CH_vvi_74 | 7 | 8 | 0.0000000000159546 |
| Zea mays | 1 | 2 | CH_zma_9 | 9 | 9 | 1.74608e-17 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |