Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.transcription factor (BBR/BPC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cucumis melo chr09 1 CH_cme_282 2 2 0.000400267
Chenopodium quinoa C_Quinoa_Scaffold_1257 1 CH_cqu_181 3 3 0.000000282885
Cucumis sativus L. chr5 1 CH_csa_306 2 2 0.000500856
Davidia involucrata GWHABJS00000822 1 CH_din_221 4 44 0.0000250335
Oryza sativa ssp. japonica chr10 1 CH_osa_115 3 4 0.000000167341
Populus trichocarpa Chr12 1 CH_ptr_229 3 3 0.00000143327
Populus trichocarpa Chr15 1 CH_ptr_230 3 3 0.00000143327
Phaseolus vulgaris Chr04 1 CH_pvu_477 2 2 0.000734727
Salvia bowleyana GWHASIU00000006 1 CH_sbo_473 2 3 0.00081892
Cucumis melo chr09 2 CH_cme_282 2 2 0.000400267
Chenopodium quinoa C_Quinoa_Scaffold_1257 2 CH_cqu_181 3 3 0.000000282885
Cucumis sativus L. chr5 2 CH_csa_306 2 2 0.000500856
Davidia involucrata GWHABJS00000822 2 CH_din_221 4 44 0.0000250335
Oryza sativa ssp. japonica chr10 2 CH_osa_115 3 4 0.000000167341
Populus trichocarpa Chr12 2 CH_ptr_229 3 3 0.00000143327
Populus trichocarpa Chr15 2 CH_ptr_230 3 3 0.00000143327
Phaseolus vulgaris Chr04 2 CH_pvu_477 2 2 0.000734727
Salvia bowleyana GWHASIU00000006 2 CH_sbo_473 2 3 0.00081892

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001