Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 7

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 1 CH_acertr_216 3 11 0.0000122921
Cannabis sativa NC_044370.1 1 CH_cansat_208 3 25 0.0000594294
Capsicum annuum PGAv.1.6.scaffold1007 1 CH_can_406 2 2 0.000495663
Cardamine hirsuta Chr3 1 CH_chi_423 2 2 0.000691204
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_506 2 3 0.000807658
Erythranthe guttata scaffold_7 1 CH_egut_118 4 10 0.00000000364661
Fragaria x ananassa Fvb4-3 1 CH_fan_325 3 9 0.000029317
Fragaria vesca Fvb4 1 CH_fve_218 3 8 0.00000582767
Lonicera japonica GWHAAZE00000006 1 CH_lonja_479 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_480 2 3 0.000462586
Malus domestica Chr13 1 CH_mdo_690 2 2 0.000568817
Malus domestica Chr16 1 CH_mdo_691 2 2 0.000568817
Petunia axillaris Peaxi162Scf00065 1 CH_pax_257 2 2 0.000211067
Physcomitrium patens Chr19 1 CH_ppa_175 2 2 0.000183818
Prunus persica Pp01 1 CH_ppe_201 3 4 0.000000333857
Populus trichocarpa Chr10 1 CH_ptr_444 2 2 0.000346801
Quercus lobata 9 1 CH_qlo_893 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_208 5 78 0.00000000836634
Rhododendron simsii chr04 1 CH_rsi_186 4 20 0.000000136478
Salvia bowleyana GWHASIU00000007 1 CH_sbo_341 2 2 0.000136494
Salix brachista GWHAAZH00000010 1 CH_sbr_292 2 2 0.000189042
Solanum lycopersicum SL4.0ch06 1 CH_sly_83 4 4 0.0000000000424659
Theobroma cacao Chromosome_10 1 CH_tca_219 3 7 0.00000281512
Utricularia gibba unitig_899 1 CH_ugi_282 2 3 0.000661092
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_374 2 2 0.000557543
Acer truncatum chr4 2 CH_acertr_216 3 11 0.0000122921
Cannabis sativa NC_044370.1 2 CH_cansat_208 3 25 0.0000594294
Capsicum annuum PGAv.1.6.scaffold1007 2 CH_can_406 2 2 0.000495663
Cardamine hirsuta Chr3 2 CH_chi_423 2 2 0.000691204
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_506 2 3 0.000807658
Eucalyptus grandis Chr08 2 CH_egr_840 2 2 0.000351165
Erythranthe guttata scaffold_7 2 CH_egut_118 4 10 0.00000000364661
Fragaria x ananassa Fvb4-3 2 CH_fan_325 3 9 0.000029317
Fragaria vesca Fvb4 2 CH_fve_218 3 8 0.00000582767
Lonicera japonica GWHAAZE00000006 2 CH_lonja_479 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_480 2 3 0.000462586
Malus domestica Chr13 2 CH_mdo_690 2 2 0.000568817
Malus domestica Chr16 2 CH_mdo_691 2 2 0.000568817
Petunia axillaris Peaxi162Scf00065 2 CH_pax_257 2 2 0.000211067
Physcomitrium patens Chr19 2 CH_ppa_175 2 2 0.000183818
Prunus persica Pp01 2 CH_ppe_201 3 4 0.000000333857
Populus trichocarpa Chr10 2 CH_ptr_444 2 2 0.000346801
Quercus lobata 9 2 CH_qlo_893 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_208 5 78 0.00000000836634
Rhododendron simsii chr04 2 CH_rsi_186 4 20 0.000000136478
Salvia bowleyana GWHASIU00000007 2 CH_sbo_341 2 2 0.000136494
Salix brachista GWHAAZH00000010 2 CH_sbr_292 2 2 0.000189042
Solanum lycopersicum SL4.0ch06 2 CH_sly_83 4 4 0.0000000000424659
Theobroma cacao Chromosome_10 2 CH_tca_219 3 7 0.00000281512
Utricularia gibba unitig_899 2 CH_ugi_282 2 3 0.000661092
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_374 2 2 0.000557543

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001