Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR04 | 1 | CH_aox_17 | 7 | 26 | 0.000000000000156712 |
| Brassica carinata | ChrB05 | 1 | CH_bca_1069 | 4 | 33 | 0.000659186 |
| Brassica carinata | ChrC03 | 1 | CH_bca_831 | 3 | 5 | 0.000258981 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_93 | 4 | 10 | 0.000000117803 |
| Cannabis sativa | NC_044379.1 | 1 | CH_cansat_172 | 3 | 5 | 0.0000106671 |
| Capsicum annuum | PGAv.1.6.scaffold798 | 1 | CH_can_199 | 3 | 3 | 0.00000573281 |
| Capsicum annuum | PGAv.1.6.scaffold685 | 1 | CH_can_238 | 3 | 5 | 0.0000572772 |
| Cicer arietinum L. | Ca_LG3_v3 | 1 | CH_car_102 | 3 | 3 | 0.0000074147 |
| Corylus avellana | 5 | 1 | CH_cav_62 | 4 | 5 | 0.00000000334573 |
| Coffea canephora | chr7 | 1 | CH_ccan_356 | 2 | 4 | 0.000702709 |
| Corchorus olitorius | AWUE01016382.1 | 1 | CH_col_37 | 3 | 3 | 0.00000448004 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1828 | 1 | CH_cqu_105 | 4 | 4 | 0.00000000233459 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2742 | 1 | CH_cqu_292 | 3 | 4 | 0.0000207374 |
| Daucus carota | DCARv2_Chr3 | 1 | CH_dca_84 | 5 | 31 | 0.0000000166073 |
| Erythranthe guttata | scaffold_2 | 1 | CH_egut_198 | 4 | 8 | 0.000000716286 |
| Erythranthe guttata | scaffold_10 | 1 | CH_egut_73 | 6 | 17 | 0.0000000000572003 |
| Glycine max | Gm09 | 1 | CH_gma_143 | 4 | 4 | 0.0000000292608 |
| Glycine max | Gm08 | 1 | CH_gma_315 | 3 | 3 | 0.0000350405 |
| Lupinus albus | Lalb_Chr02 | 1 | CH_lal_57 | 5 | 7 | 0.000000000687028 |
| Nicotiana tabacum | Nitab4.5_0000948 | 1 | CH_nta_57 | 3 | 3 | 0.00000151713 |
| Petunia axillaris | Peaxi162Scf00011 | 1 | CH_pax_52 | 4 | 4 | 0.0000000024868 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_262 | 3 | 3 | 0.00000509716 |
| Striga asiatica | scaffold338 | 1 | CH_sas_50 | 3 | 5 | 0.0000328304 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_243 | 3 | 3 | 0.00000915189 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_45 | 6 | 6 | 0.00000000000000158261 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_286 | 3 | 3 | 0.00000523916 |
| Theobroma cacao | Chromosome_2 | 1 | CH_tca_224 | 3 | 3 | 0.00000450584 |
| Vanilla planifolia | CM028151.1 | 1 | CH_vpl_340 | 3 | 8 | 0.000521488 |
| Vanilla planifolia | CM028150.1 | 1 | CH_vpl_65 | 5 | 33 | 0.000000811318 |
| Aquilegia oxysepala | CHR04 | 2 | CH_aox_17 | 7 | 26 | 0.000000000000156712 |
| Brassica carinata | ChrB05 | 2 | CH_bca_1069 | 4 | 33 | 0.000659186 |
| Brassica carinata | ChrC03 | 2 | CH_bca_831 | 3 | 5 | 0.000258981 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_93 | 4 | 10 | 0.000000117803 |
| Cannabis sativa | NC_044379.1 | 2 | CH_cansat_172 | 3 | 5 | 0.0000106671 |
| Capsicum annuum | PGAv.1.6.scaffold798 | 2 | CH_can_199 | 3 | 3 | 0.00000573281 |
| Capsicum annuum | PGAv.1.6.scaffold685 | 2 | CH_can_238 | 3 | 5 | 0.0000572772 |
| Cicer arietinum L. | Ca_LG3_v3 | 2 | CH_car_102 | 3 | 3 | 0.0000074147 |
| Corylus avellana | 5 | 2 | CH_cav_62 | 4 | 5 | 0.00000000334573 |
| Coffea canephora | chr7 | 2 | CH_ccan_356 | 2 | 4 | 0.000702709 |
| Corchorus olitorius | AWUE01016382.1 | 2 | CH_col_37 | 3 | 3 | 0.00000448004 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1828 | 2 | CH_cqu_105 | 4 | 4 | 0.00000000233459 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2742 | 2 | CH_cqu_292 | 3 | 4 | 0.0000207374 |
| Daucus carota | DCARv2_Chr3 | 2 | CH_dca_84 | 5 | 31 | 0.0000000166073 |
| Erythranthe guttata | scaffold_2 | 2 | CH_egut_198 | 4 | 8 | 0.000000716286 |
| Erythranthe guttata | scaffold_10 | 2 | CH_egut_73 | 6 | 17 | 0.0000000000572003 |
| Glycine max | Gm09 | 2 | CH_gma_143 | 4 | 4 | 0.0000000292608 |
| Glycine max | Gm08 | 2 | CH_gma_315 | 3 | 3 | 0.0000350405 |
| Lupinus albus | Lalb_Chr02 | 2 | CH_lal_57 | 5 | 7 | 0.000000000687028 |
| Nicotiana tabacum | Nitab4.5_0000948 | 2 | CH_nta_57 | 3 | 3 | 0.00000151713 |
| Petunia axillaris | Peaxi162Scf00011 | 2 | CH_pax_52 | 4 | 4 | 0.0000000024868 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_262 | 3 | 3 | 0.00000509716 |
| Striga asiatica | scaffold338 | 2 | CH_sas_50 | 3 | 5 | 0.0000328304 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_243 | 3 | 3 | 0.00000915189 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_45 | 6 | 6 | 0.00000000000000158261 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_286 | 3 | 3 | 0.00000523916 |
| Theobroma cacao | Chromosome_2 | 2 | CH_tca_224 | 3 | 3 | 0.00000450584 |
| Vanilla planifolia | CM028151.1 | 2 | CH_vpl_340 | 3 | 8 | 0.000521488 |
| Vanilla planifolia | CM028150.1 | 2 | CH_vpl_65 | 5 | 33 | 0.000000811318 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |