Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 1 | CH_aar_129 | 3 | 3 | 0.0000561229 |
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_212 | 3 | 3 | 0.0000507777 |
| Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_213 | 3 | 3 | 0.0000507777 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_87 | 4 | 4 | 0.00000000580254 |
| Amborella trichopoda | AmTr_v1.0_scaffold00085 | 1 | CH_atr_137 | 3 | 3 | 0.0000107919 |
| Brassica carinata | ChrB04 | 1 | CH_bca_92 | 6 | 11 | 0.000000000177395 |
| Brassica napus | A01 | 1 | CH_bna_554 | 3 | 3 | 0.000216419 |
| Brassica napus | C01 | 1 | CH_bna_85 | 6 | 11 | 0.000000000186753 |
| Brassica rapa | A01 | 1 | CH_bra_246 | 3 | 3 | 0.00015134 |
| Cannabis sativa | NC_044373.1 | 1 | CH_cansat_186 | 4 | 14 | 0.0000265575 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 1 | CH_can_298 | 3 | 3 | 0.000101143 |
| Citrullus lanatus | CG_Chr02 | 1 | CH_cla_20 | 5 | 7 | 0.00000000270888 |
| Cucumis melo | chr01 | 1 | CH_cme_43 | 6 | 11 | 0.000000000026642 |
| Carica papaya | supercontig_138 | 1 | CH_cpa_107 | 4 | 9 | 0.00000343751 |
| Carica papaya | supercontig_13 | 1 | CH_cpa_130 | 3 | 3 | 0.0000274393 |
| Capsella rubella | scaffold_4 | 1 | CH_cru_241 | 3 | 3 | 0.0000676491 |
| Cucumis sativus L. | chr7 | 1 | CH_csa_150 | 4 | 7 | 0.00000402047 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_375 | 3 | 5 | 0.000149656 |
| Helianthus annuus | HanXRQChr09 | 1 | CH_han_322 | 4 | 8 | 0.00000235145 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_193 | 4 | 5 | 0.000000167436 |
| Medicago truncatula | chr8 | 1 | CH_mtr_279 | 4 | 4 | 0.0000000821955 |
| Olea europaea | chr15 | 1 | CH_oeu_13 | 7 | 14 | 0.00000000000016774 |
| Petunia axillaris | Peaxi162Scf00519 | 1 | CH_pax_285 | 3 | 4 | 0.000392915 |
| Papaver somniferum | NC_039361.1 | 1 | CH_pso_189 | 5 | 14 | 0.0000000192566 |
| Phaseolus vulgaris | Chr06 | 1 | CH_pvu_325 | 3 | 3 | 0.000168634 |
| Quercus lobata | 6 | 1 | CH_qlo_717 | 3 | 3 | 0.000078369 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_86 | 8 | 80 | 0.000000000413444 |
| Sechium edule | LG04 | 1 | CH_sed_29 | 6 | 6 | 0.00000000000150948 |
| Sechium edule | LG05 | 1 | CH_sed_98 | 4 | 4 | 0.000000430339 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_238 | 5 | 5 | 0.00000000000111249 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_655 | 3 | 3 | 0.00000548214 |
| Solanum pennellii | Spenn-ch12 | 1 | CH_spe_392 | 3 | 4 | 0.000180062 |
| Solanum pennellii | Spenn-ch09 | 1 | CH_spe_490 | 3 | 5 | 0.000449822 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_219 | 4 | 5 | 0.000000545978 |
| Solanum tuberosum | ST4.03ch05 | 1 | CH_stu_220 | 4 | 5 | 0.000000545978 |
| Solanum tuberosum | ST4.03ch12 | 1 | CH_stu_538 | 3 | 4 | 0.00034789 |
| Zea mays | 10 | 1 | CH_zma_213 | 3 | 4 | 0.000288752 |
| Aethionema arabicum | LG-11 | 2 | CH_aar_129 | 3 | 3 | 0.0000561229 |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_212 | 3 | 3 | 0.0000507777 |
| Arabidopsis lyrata | scaffold_3 | 2 | CH_aly_213 | 3 | 3 | 0.0000507777 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_87 | 4 | 4 | 0.00000000580254 |
| Amborella trichopoda | AmTr_v1.0_scaffold00085 | 2 | CH_atr_137 | 3 | 3 | 0.0000107919 |
| Brassica carinata | ChrB04 | 2 | CH_bca_92 | 6 | 11 | 0.000000000177395 |
| Brassica rapa | A01 | 2 | CH_bra_246 | 3 | 3 | 0.00015134 |
| Cannabis sativa | NC_044373.1 | 2 | CH_cansat_186 | 4 | 14 | 0.0000265575 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 2 | CH_can_298 | 3 | 3 | 0.000101143 |
| Citrullus lanatus | CG_Chr02 | 2 | CH_cla_20 | 5 | 7 | 0.00000000270888 |
| Cucumis melo | chr01 | 2 | CH_cme_43 | 6 | 11 | 0.000000000026642 |
| Carica papaya | supercontig_138 | 2 | CH_cpa_107 | 4 | 9 | 0.00000343751 |
| Carica papaya | supercontig_13 | 2 | CH_cpa_130 | 3 | 3 | 0.0000274393 |
| Capsella rubella | scaffold_4 | 2 | CH_cru_241 | 3 | 3 | 0.0000676491 |
| Cucumis sativus L. | chr7 | 2 | CH_csa_150 | 4 | 7 | 0.00000402047 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_375 | 3 | 5 | 0.000149656 |
| Helianthus annuus | HanXRQChr09 | 2 | CH_han_322 | 4 | 8 | 0.00000235145 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_193 | 4 | 5 | 0.000000167436 |
| Olea europaea | chr15 | 2 | CH_oeu_13 | 7 | 14 | 0.00000000000016774 |
| Petunia axillaris | Peaxi162Scf00519 | 2 | CH_pax_285 | 3 | 4 | 0.000392915 |
| Papaver somniferum | NC_039361.1 | 2 | CH_pso_189 | 5 | 14 | 0.0000000192566 |
| Phaseolus vulgaris | Chr06 | 2 | CH_pvu_325 | 3 | 3 | 0.000168634 |
| Quercus lobata | 6 | 2 | CH_qlo_717 | 3 | 3 | 0.000078369 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_86 | 8 | 80 | 0.000000000413444 |
| Sechium edule | LG04 | 2 | CH_sed_29 | 6 | 6 | 0.00000000000150948 |
| Sechium edule | LG05 | 2 | CH_sed_98 | 4 | 4 | 0.000000430339 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_238 | 5 | 5 | 0.00000000000111249 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_655 | 3 | 3 | 0.00000548214 |
| Solanum pennellii | Spenn-ch12 | 2 | CH_spe_392 | 3 | 4 | 0.000180062 |
| Solanum pennellii | Spenn-ch09 | 2 | CH_spe_490 | 3 | 5 | 0.000449822 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_219 | 4 | 5 | 0.000000545978 |
| Solanum tuberosum | ST4.03ch05 | 2 | CH_stu_220 | 4 | 5 | 0.000000545978 |
| Solanum tuberosum | ST4.03ch12 | 2 | CH_stu_538 | 3 | 4 | 0.00034789 |
| Zea mays | 10 | 2 | CH_zma_213 | 3 | 4 | 0.000288752 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |